BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0656100 Os02g0656100|AK073462
         (310 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0656100  Conserved hypothetical protein                      351   4e-97

>Os02g0656100 Conserved hypothetical protein
          Length = 310

 Score =  351 bits (900), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 192/310 (61%), Positives = 192/310 (61%)

Query: 1   MADDVVEXXXXXXPSTQXXXXXXIHVVAKNAMNSSKQFXXXXXXXXXXXXXXXXXXXXXX 60
           MADDVVE      PSTQ      IHVVAKNAMNSSKQF                      
Sbjct: 1   MADDVVEAAASSSPSTQGGGGGGIHVVAKNAMNSSKQFSSALAPVAVLLAVAVGAVSLLP 60

Query: 61  XXXQAVWEVPHLFLLGLVVSYGVFAQKISTXXXXXXXXXXXXXXXARAWNSRYLSDDPLV 120
              QAVWEVPHLFLLGLVVSYGVFAQKIST               ARAWNSRYLSDDPLV
Sbjct: 61  SLAQAVWEVPHLFLLGLVVSYGVFAQKISTGGSGGGGGGGGGDDGARAWNSRYLSDDPLV 120

Query: 121 VVADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIESEAGDASDDGIGAETDSSA 180
           VVADN                                 GIESEAGDASDDGIGAETDSSA
Sbjct: 121 VVADNAASDDGGGGGASGRPLSLPVRRLKPPPPAPTMPGIESEAGDASDDGIGAETDSSA 180

Query: 181 STAGFWGAAPSPPSVLDAVCRSRKXXXXXXXXXXXXMSKGFPSYISPAPRCDQSFSXXXX 240
           STAGFWGAAPSPPSVLDAVCRSRK            MSKGFPSYISPAPRCDQSFS    
Sbjct: 181 STAGFWGAAPSPPSVLDAVCRSRKPAATATAAAPSAMSKGFPSYISPAPRCDQSFSDDGE 240

Query: 241 XXXXXXXXXXXXXXXXXMAASPQRSYVDHDDYNGDGDELSELAAEVEDEVDRKADEFIAK 300
                            MAASPQRSYVDHDDYNGDGDELSELAAEVEDEVDRKADEFIAK
Sbjct: 241 VTDWDDDDDEKADVQDEMAASPQRSYVDHDDYNGDGDELSELAAEVEDEVDRKADEFIAK 300

Query: 301 FREQIRLQRL 310
           FREQIRLQRL
Sbjct: 301 FREQIRLQRL 310



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,757,733
Number of extensions: 190243
Number of successful extensions: 816
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 209
Effective length of database: 11,762,187
Effective search space: 2458297083
Effective search space used: 2458297083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)