BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0655300 Os02g0655300|AY363174
         (257 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0655300  Similar to 3-isopropylmalate dehydratase, smal...   420   e-118

>Os02g0655300 Similar to 3-isopropylmalate dehydratase, small subunit
          Length = 257

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/240 (87%), Positives = 209/240 (87%)

Query: 18  VTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTXXXXXXXXXXXXGDSTSAGVFH 77
           VTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLT            GDSTSAGVFH
Sbjct: 18  VTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTAVVAAAAAAAAAGDSTSAGVFH 77

Query: 78  GECFVVGDNIDTDQIIPAEHLTLVPSKPDEYRKLGSFAFVGLPTAAYPTPFVAPGEETTR 137
           GECFVVGDNIDTDQIIPAEHLTLVPSKPDEYRKLGSFAFVGLPTAAYPTPFVAPGEETTR
Sbjct: 78  GECFVVGDNIDTDQIIPAEHLTLVPSKPDEYRKLGSFAFVGLPTAAYPTPFVAPGEETTR 137

Query: 138 YAVIIGGANFGCGSSREHXXXXXXXXXXXXXXXXXXXRIFFRNSVATGEVYPLELADTGA 197
           YAVIIGGANFGCGSSREH                   RIFFRNSVATGEVYPLELADTGA
Sbjct: 138 YAVIIGGANFGCGSSREHAPVALGAAGARAVVAEGYARIFFRNSVATGEVYPLELADTGA 197

Query: 198 WKECKTGDVVTVELDNCVMINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGMIASKSA 257
           WKECKTGDVVTVELDNCVMINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGMIASKSA
Sbjct: 198 WKECKTGDVVTVELDNCVMINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGMIASKSA 257



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,116,107
Number of extensions: 321473
Number of successful extensions: 718
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)