Os02g0655300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-isopropylmalate dehydratase, small subunit.
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Os02g0655300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-isopropylmalate dehydratase, small subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.1 | 0.17 | 13.9 | 0.0138 | 0.21 | 0.615 | 0.104 | -0.365 | -0.243 | 20.1 | 25.66 | 665 | -- | -- |
| 13.21 | 0.169 | 13.9 | 0.0915 | 0.208 | 0.623 | -0.0726 | -- | -0.182 | 20 | 25.9 | 692 | -- | -- |
| 12.97 | 0.168 | 13.9 | -0.0029 | 0.186 | 0.644 | -- | -0.293 | -0.231 | 21.3 | 25.7 | 614 | -- | -- |
| 13.03 | 0.168 | 13.9 | 0.115 | 0.189 | 0.62 | -- | -- | -0.206 | 21.3 | 25.8 | 599 | -- | -- |
| 14.37 | 0.177 | 13.9 | -0.0495 | -- | 0.759 | -- | -0.429 | -0.254 | -- | 25.9 | 660 | -- | -- |
| 24.64 | 0.233 | 13.8 | 0.289 | 0.535 | -- | 0.0945 | -- | 0.000186 | 20.2 | -- | -- | -- | -- |
| 24.67 | 0.233 | 13.8 | 0.286 | 0.535 | -- | -- | -- | 0.000245 | 20.2 | -- | -- | -- | -- |
| 14.61 | 0.178 | 13.9 | 0.0638 | -- | 0.729 | -- | -- | -0.218 | -- | 25.99 | 633 | -- | -- |
| 13.28 | 0.17 | 13.9 | -- | 0.187 | 0.626 | -- | -- | -0.217 | 21.6 | 25.78 | 598 | -- | -- |
| 40.46 | 0.297 | 13.8 | 0.282 | -- | -- | -- | -- | -0.00592 | -- | -- | -- | -- | -- |
| 26.82 | 0.242 | 13.9 | -- | 0.534 | -- | -- | -- | -0.0316 | 20.2 | -- | -- | -- | -- |
| 14.7 | 0.179 | 13.9 | -- | -- | 0.746 | -- | -- | -0.229 | -- | 25.91 | 657 | -- | -- |
| 42.55 | 0.304 | 13.8 | -- | -- | -- | -- | -- | -0.0372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.91 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 18 |
| 4 | 12.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 11 | 13.00 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 16 |
| 16 | 13.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 26 | 13.13 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 34 | 13.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 79 | 13.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 108 | 13.51 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 113 | 13.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 18 |
| 163 | 13.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 165 | 13.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 171 | 13.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 183 | 13.59 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 185 | 13.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 239 | 13.62 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 241 | 13.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 254 | 13.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 302 | 13.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 312 | 13.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 420 | 13.74 | temperature | 25 | 720 | < th | dose independent | sin | 23 | NA |
| 514 | 13.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 518 | 13.79 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 564 | 13.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 647 | 13.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 658 | 13.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 685 | 13.86 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 701 | 13.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 721 | 13.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 755 | 13.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 815 | 13.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 856 | 13.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 11 |