BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0641300 Os02g0641300|J075178J01
(238 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0641300 Myb, DNA-binding domain containing protein 294 3e-80
Os04g0532800 Myb, DNA-binding domain containing protein 98 5e-21
>Os02g0641300 Myb, DNA-binding domain containing protein
Length = 238
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/238 (64%), Positives = 153/238 (64%)
Query: 1 AFLTSNSPDEWSRIARHLPGRTDNEVKNYWNSYLKKRVESGGGKTSQGXXXXXXXXXXXX 60
AFLTSNSPDEWSRIARHLPGRTDNEVKNYWNSYLKKRVESGGGKTSQG
Sbjct: 1 AFLTSNSPDEWSRIARHLPGRTDNEVKNYWNSYLKKRVESGGGKTSQGPPTTPASAASSP 60
Query: 61 XXXXXXHSLQQKPHEPANXXXXXXXXXXXXXXXXXXCLTVTTDHPPVSRPHAAVTPKVMF 120
HSLQQKPHEPAN CLTVTTDHPPVSRPHAAVTPKVMF
Sbjct: 61 ADSDDSHSLQQKPHEPANSDSSEPAHESSSASADSSCLTVTTDHPPVSRPHAAVTPKVMF 120
Query: 121 ADWLDMEYICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVHQADGPSCGVDD 180
ADWLDMEYIC SVHQADGPSCGVDD
Sbjct: 121 ADWLDMEYICGQVAAAPGLDAAGFAVVGGAAGDQQQQQQQVMSQDGSVHQADGPSCGVDD 180
Query: 181 SSLXXXXXXXXXXXXXCWDFQEQFDSIDQMQASGGGGGFCDLLSMSDFDLWAELERTA 238
SSL CWDFQEQFDSIDQMQASGGGGGFCDLLSMSDFDLWAELERTA
Sbjct: 181 SSLQQQQQEGFGGNGGCWDFQEQFDSIDQMQASGGGGGFCDLLSMSDFDLWAELERTA 238
>Os04g0532800 Myb, DNA-binding domain containing protein
Length = 273
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 88/226 (38%), Gaps = 38/226 (16%)
Query: 3 LTSNSPDEWSRIARHLPGRTDNEVKNYWNSYLKKRVESGGGKTSQGXXXXXXXXXXXXXX 62
L + ++WS+IARHLPGRTDNEVKNYWNSYLKKRVE G + +
Sbjct: 82 LHATMGNKWSQIARHLPGRTDNEVKNYWNSYLKKRVE--GAEAAARKSAEPADVVTGSPN 139
Query: 63 XXXXHSLQQKPHEPANXXXXXXXXXXXXXXXXXXCLTVTTDHPPVSRPHAAVTPKVMFAD 122
+ PA+ LT RPHA V PKVMFAD
Sbjct: 140 RSETGQERVAADRPASSESSGPVESSSADDSSS--LTEPAAGLAAVRPHAPVIPKVMFAD 197
Query: 123 WLDMEYICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVHQADGPSCGVDDSS 182
W DM+Y S Q D P G DS
Sbjct: 198 WFDMDY----------------------GTSLAGTAPGLSYQGSSSVQVDVPCGGAVDS- 234
Query: 183 LXXXXXXXXXXXXXCWDFQEQFDSIDQMQASGGGGGFCDLLSMSDF 228
CWDF D+ D MQ GGGG CDLLSMS+F
Sbjct: 235 -----LHGLGDGGFCWDFD---DAADHMQ---GGGGLCDLLSMSEF 269
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,492,676
Number of extensions: 189297
Number of successful extensions: 704
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)