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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0641300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.08 (0.0505) R2 : 0.734
β1 : -1.07 (0.185) R2dD : 0.023 R2D : 0.0333
β2 : 4.88 (0.143) R2dC : 0.985 R2C : 0.405
β3 : -3.2 (0.171) R2dE : 0.298 R2E : -0.291
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.322 (0.109) R2dN8 : 0.0068 R2N8 : -0.00381
σ : 0.939
deviance : 406.77
__
_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 13.12
memory length : 478
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.03
open length of G : 4.62

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.13 0.954 5.09 -1.13 4.82 -3.26 -1.96 -0.0255 0.252 12.8 10.17 366 2.41 6.91
398.34 0.93 5.06 -1.21 4.7 -3.2 -2.34 -- 0.26 13.1 13.17 447 3.05 4.9
422.01 0.957 5.1 -1.25 4.99 -3.42 -- -1.58 0.234 12.8 8.671 377 2.57 6.78
406.77 0.939 5.08 -1.07 4.88 -3.2 -- -- 0.322 12.9 13.12 478 3.03 4.62
1194.41 1.61 5.3 -0.708 -- -2.96 -- -0.000366 0.128 -- -20.62 1545 2.63 4.98
497.65 1.05 5.21 -1.34 4.05 -- -2.55 -- 0.0271 14.9 -- -- -- --
519.88 1.07 5.22 -1.4 4.04 -- -- -- 0.0122 14.9 -- -- -- --
1054.28 1.51 5.09 -0.934 -- -2.97 -- -- 0.441 -- -69.08 1560 0.0167 7.92
438.41 0.975 5.03 -- 5.11 -3.49 -- -- 0.472 12.7 12.85 496 3.03 4.37
1461.93 1.79 5.24 -1.57 -- -- -- -- -0.0916 -- -- -- -- --
571.69 1.12 5.18 -- 4.07 -- -- -- 0.168 14.9 -- -- -- --
1082.76 1.53 5.09 -- -- -3.1 -- -- 0.552 -- -68.57 1551 0.0167 7.85
1527.31 1.82 5.2 -- -- -- -- -- 0.083 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 415.88 temperature 30.0 270 < th dose independent rect. 22 17
2 418.55 humidity 60.0 270 > th dose independent rect. 3 8
4 420.90 temperature 10.0 270 > th dose dependent rect. 3 7
5 422.27 temperature 20.0 720 > th dose dependent rect. 5 2
9 424.49 humidity 50.0 270 > th dose dependent rect. 3 8
14 426.43 atmosphere 1000.0 270 > th dose independent rect. 22 17
19 426.91 temperature 20.0 720 > th dose independent rect. 5 1
20 426.98 atmosphere 1000.0 90 > th dose independent rect. 9 9
21 427.17 temperature 20.0 720 > th dose independent rect. 4 3
27 428.49 temperature 25.0 720 < th dose dependent rect. 6 1
32 429.01 temperature 10.0 270 > th dose dependent rect. 22 5
35 429.67 humidity 50.0 270 > th dose independent rect. 3 18
43 430.50 radiation 20.0 270 < th dose independent rect. 17 15
55 431.22 wind 1.0 10 > th dose independent rect. 18 17
56 431.24 atmosphere 1000.0 10 > th dose independent rect. 24 18
66 431.94 temperature 10.0 90 > th dose dependent rect. 5 18
72 432.32 humidity 90.0 270 < th dose independent rect. 8 9
78 432.79 temperature 15.0 270 > th dose independent rect. 8 9
86 433.40 wind 1.0 43200 < th dose dependent rect. 9 5
87 433.60 wind 1.0 10 > th dose independent rect. 18 15
88 433.61 humidity 50.0 4320 > th dose independent rect. 19 15
94 433.96 humidity 80.0 270 > th dose independent rect. 22 5
98 434.10 humidity 50.0 270 > th dose dependent rect. 3 18
101 434.15 radiation 40.0 270 < th dose dependent rect. 17 15
105 434.21 atmosphere 995.0 270 > th dose dependent rect. 22 5
111 434.57 humidity 50.0 90 > th dose dependent rect. 5 7
114 434.68 wind 9.0 270 < th dose independent rect. 3 19
124 435.29 wind 9.0 270 < th dose independent rect. 15 7
128 435.37 atmosphere 1000.0 30 > th dose independent rect. 11 7
132 435.54 humidity 60.0 90 > th dose independent rect. 18 17
133 435.57 atmosphere 1010.0 90 < th dose independent rect. 5 6
139 435.90 humidity 50.0 90 > th dose dependent rect. 5 18
140 435.91 temperature 20.0 720 < th dose independent rect. 4 3
145 436.02 radiation 40.0 270 < th dose dependent rect. 16 17
146 436.09 humidity 80.0 14400 > th dose independent rect. 22 10
147 436.11 precipitation 0.1 270 < th dose independent rect. 22 5
148 436.11 precipitation 0.1 270 < th dose dependent rect. 22 5
149 436.13 precipitation 0.1 270 < th dose independent rect. 22 17
150 436.13 precipitation 0.1 270 < th dose dependent rect. 22 17
151 436.15 radiation 10.0 270 < th dose dependent rect. 3 19
153 436.28 wind 9.0 270 < th dose independent rect. 22 5
154 436.28 temperature 10.0 270 > th dose independent rect. 22 5
155 436.28 temperature 30.0 270 < th dose independent rect. 22 5
156 436.28 humidity 50.0 270 > th dose independent rect. 22 5
159 436.28 atmosphere 995.0 270 > th dose independent rect. 22 5
160 436.28 radiation 1.0 270 < th dose independent rect. 22 5
165 436.28 temperature 10.0 270 > th dose independent rect. 3 19
166 436.28 radiation 1.0 270 < th dose dependent rect. 22 5
172 436.37 humidity 60.0 90 > th dose independent rect. 5 6
175 436.46 humidity 80.0 14400 < th dose independent rect. 20 11
176 436.46 atmosphere 1000.0 10 > th dose independent rect. 3 23
179 436.57 humidity 70.0 270 > th dose independent rect. 17 15
186 436.75 humidity 50.0 270 > th dose dependent rect. 22 5
188 436.76 humidity 90.0 14400 < th dose dependent rect. 1 1
197 437.01 humidity 80.0 14400 > th dose independent rect. 22 5
207 437.39 temperature 30.0 30 < th dose independent rect. 11 7
216 437.57 wind 9.0 270 < th dose dependent rect. 22 5
218 437.60 precipitation 0.1 270 < th dose independent rect. 10 17
219 437.60 precipitation 0.1 270 < th dose dependent rect. 10 17
220 437.62 radiation 40.0 270 < th dose independent rect. 15 7
221 437.62 wind 9.0 270 < th dose independent rect. 4 17
226 437.68 radiation 10.0 270 < th dose dependent rect. 4 17
229 437.71 wind 9.0 270 < th dose independent rect. 17 15
233 437.78 temperature 10.0 270 > th dose independent rect. 3 7
234 437.78 atmosphere 995.0 270 > th dose independent rect. 3 7
235 437.78 atmosphere 1015.0 270 < th dose independent rect. 3 7
236 437.78 temperature 30.0 90 < th dose independent rect. 9 9
237 437.78 temperature 10.0 270 > th dose independent rect. 10 17
239 437.79 atmosphere 1015.0 270 < th dose independent rect. 3 19
241 437.83 humidity 90.0 14400 < th dose dependent rect. 24 3
246 437.85 humidity 90.0 14400 < th dose dependent rect. 24 7
250 437.94 humidity 80.0 14400 < th dose independent rect. 21 6
253 437.95 wind 9.0 270 < th dose independent rect. 3 7
259 438.06 humidity 80.0 14400 < th dose independent rect. 21 8
263 438.12 precipitation 0.1 270 < th dose independent rect. 8 9
264 438.12 precipitation 0.1 270 < th dose dependent rect. 8 9
267 438.14 temperature 10.0 270 > th dose independent rect. 15 7
268 438.14 temperature 10.0 270 > th dose independent rect. 22 17
269 438.15 radiation 40.0 270 < th dose independent rect. 3 6
278 438.19 humidity 90.0 14400 < th dose dependent rect. 4 3
286 438.32 humidity 50.0 270 > th dose independent rect. 17 15
293 438.40 humidity 70.0 10 > th dose independent rect. 18 18
302 438.53 precipitation 0.1 270 < th dose independent rect. 21 7
303 438.53 precipitation 0.1 270 < th dose dependent rect. 21 7
309 438.62 humidity 80.0 14400 < th dose dependent rect. 21 10
311 438.64 wind 1.0 43200 < th dose independent rect. 9 5
316 438.69 wind 9.0 270 < th dose independent rect. 22 17
343 439.01 atmosphere 1015.0 270 < th dose independent rect. 8 9
344 439.01 temperature 10.0 270 > th dose independent rect. 17 15
345 439.02 humidity 80.0 14400 < th dose independent rect. 22 2
355 439.16 temperature 30.0 270 < th dose independent rect. 9 6
365 439.24 humidity 80.0 14400 < th dose dependent rect. 21 6
367 439.26 temperature 10.0 270 > th dose independent rect. 21 7
368 439.26 temperature 30.0 270 < th dose independent rect. 21 7
369 439.26 humidity 50.0 270 > th dose independent rect. 21 7
372 439.26 atmosphere 995.0 270 > th dose independent rect. 21 7
373 439.26 radiation 1.0 270 < th dose independent rect. 21 7
378 439.26 temperature 10.0 270 > th dose independent rect. 4 17
380 439.26 radiation 1.0 270 < th dose dependent rect. 21 7
395 439.39 atmosphere 1015.0 270 < th dose independent rect. 4 17
397 439.40 wind 9.0 270 < th dose independent rect. 21 7
408 439.54 radiation 1.0 270 > th dose independent rect. 8 9
431 439.59 precipitation 0.1 270 < th dose independent rect. 3 19
432 439.59 precipitation 0.1 270 < th dose dependent rect. 3 19
434 439.64 atmosphere 1000.0 90 > th dose independent rect. 11 18
442 439.83 precipitation 0.1 270 < th dose independent rect. 15 7
443 439.83 wind 1.0 270 > th dose independent rect. 4 17
444 439.83 precipitation 0.1 270 < th dose dependent rect. 15 7
453 439.95 precipitation 0.1 270 < th dose independent rect. 3 7
454 439.95 precipitation 0.1 270 < th dose dependent rect. 3 7
472 440.19 wind 1.0 270 > th dose independent rect. 15 7
479 440.24 atmosphere 995.0 270 > th dose dependent rect. 9 7
495 440.40 atmosphere 995.0 270 > th dose independent rect. 17 15
505 440.45 humidity 80.0 14400 < th dose dependent rect. 22 1
507 440.49 wind 1.0 270 > th dose independent rect. 3 19
549 440.87 radiation 1.0 43200 < th dose dependent rect. 1 3
568 441.02 wind 1.0 270 > th dose independent rect. 3 7
572 441.07 humidity 50.0 10 > th dose dependent rect. 6 7
577 441.10 wind 1.0 43200 > th dose independent rect. 9 5
581 441.14 wind 9.0 43200 > th dose dependent rect. 15 1
588 441.18 atmosphere 995.0 10 > th dose dependent rect. 24 18
607 441.26 atmosphere 1015.0 270 < th dose independent rect. 22 5
609 441.32 temperature 30.0 270 < th dose independent rect. 17 15
613 441.43 atmosphere 1015.0 270 < th dose independent rect. 15 7
615 441.44 humidity 80.0 14400 > th dose independent rect. 2 1
618 441.47 wind 9.0 270 < th dose independent rect. 10 17
645 441.72 atmosphere 995.0 270 > th dose dependent rect. 22 18
660 441.86 precipitation 0.1 270 < th dose independent rect. 4 17
661 441.86 precipitation 0.1 270 < th dose dependent rect. 4 17
666 441.96 atmosphere 1010.0 14400 > th dose independent rect. 21 1
682 442.13 temperature 25.0 720 < th dose independent rect. 2 9
683 442.13 atmosphere 995.0 270 > th dose independent rect. 3 19
706 442.26 atmosphere 1015.0 270 < th dose independent rect. 22 17
712 442.29 atmosphere 995.0 90 > th dose dependent rect. 11 7
721 442.37 atmosphere 1010.0 14400 < th dose independent rect. 21 1
735 442.50 humidity 50.0 270 > th dose independent rect. 15 7
737 442.50 humidity 50.0 14400 > th dose dependent rect. 1 5
739 442.50 atmosphere 995.0 90 > th dose dependent rect. 24 17
740 442.51 wind 1.0 14400 < th dose independent rect. 12 1
755 442.59 wind 1.0 43200 > th dose independent rect. 11 3
776 442.72 humidity 80.0 14400 > th dose independent rect. 5 2
777 442.73 atmosphere 995.0 270 > th dose independent rect. 15 7
778 442.73 radiation 40.0 270 < th dose dependent rect. 15 7
794 442.82 atmosphere 1010.0 14400 > th dose independent rect. 21 3
799 442.87 atmosphere 1010.0 14400 > th dose independent rect. 23 1
807 442.92 atmosphere 1010.0 14400 > th dose independent rect. 20 9
811 442.94 wind 1.0 270 > th dose independent rect. 22 5
817 442.96 precipitation 0.1 270 < th dose independent rect. 17 15
818 442.96 precipitation 0.1 270 < th dose dependent rect. 17 15
820 442.99 humidity 80.0 14400 < th dose independent rect. 1 7
823 443.01 atmosphere 1010.0 14400 > th dose independent rect. 17 12
824 443.02 wind 9.0 270 < th dose independent rect. 8 9
840 443.14 humidity 50.0 14400 > th dose dependent rect. 1 2
886 443.31 atmosphere 1010.0 14400 > th dose independent rect. 2 2
892 443.32 atmosphere 1010.0 14400 > th dose independent rect. 17 8
910 443.37 wind 1.0 14400 < th dose dependent rect. 12 1
918 443.42 humidity 80.0 14400 < th dose independent rect. 2 1
919 443.42 humidity 80.0 14400 < th dose independent rect. 5 2
920 443.43 atmosphere 1010.0 14400 < th dose independent rect. 24 4
922 443.44 atmosphere 1010.0 14400 < th dose independent rect. 2 1
937 443.47 temperature 10.0 10 > th dose dependent rect. 6 17
958 443.54 atmosphere 1010.0 14400 > th dose independent sin 13 NA
967 443.57 atmosphere 1010.0 14400 < th dose independent rect. 20 9
975 443.60 atmosphere 1010.0 14400 > th dose independent rect. 12 17
978 443.61 atmosphere 1010.0 14400 < th dose independent rect. 16 13