BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0612300 Os02g0612300|AK069360
         (243 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0612300  Similar to Nuclear cap binding protein subunit...   422   e-118

>Os02g0612300 Similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear
           cap binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 243

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/224 (93%), Positives = 210/224 (93%)

Query: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60
           MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEXXXXX 120
           RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEE     
Sbjct: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG 120

Query: 121 XXXXXXXXXDEYRTDYDPGRGGYGKMVQKELEAQRELVDYGGAFQPNAPPQYDRGDRKRG 180
                    DEYRTDYDPGRGGYGKMVQKELEAQRELVDYGGAFQPNAPPQYDRGDRKRG
Sbjct: 121 RGRSGGQVRDEYRTDYDPGRGGYGKMVQKELEAQRELVDYGGAFQPNAPPQYDRGDRKRG 180

Query: 181 YGDSYRNDRDYQRKRYRNDERSSQRAPDSEFKRDAIDSEKNPRF 224
           YGDSYRNDRDYQRKRYRNDERSSQRAPDSEFKRDAIDSEKNPRF
Sbjct: 181 YGDSYRNDRDYQRKRYRNDERSSQRAPDSEFKRDAIDSEKNPRF 224



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,563,443
Number of extensions: 320010
Number of successful extensions: 1170
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)