BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0603800 Os02g0603800|AK120769
         (744 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0603800  Similar to Isoprenoid biosynthesis-like protei...  1464   0.0  

>Os02g0603800 Similar to Isoprenoid biosynthesis-like protein (Fragment)
          Length = 744

 Score = 1464 bits (3791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/744 (96%), Positives = 717/744 (96%)

Query: 1   MATGVAPAPLPHVRVRDGGIGFTRSVDFAKILSVPATLRVGSSRGRVLVAKSSSTGSDTM 60
           MATGVAPAPLPHVRVRDGGIGFTRSVDFAKILSVPATLRVGSSRGRVLVAKSSSTGSDTM
Sbjct: 1   MATGVAPAPLPHVRVRDGGIGFTRSVDFAKILSVPATLRVGSSRGRVLVAKSSSTGSDTM 60

Query: 61  ELEPSSEGSPLLVPRQKYCESIYETRRRKTRTVMVGNVPLGSDHPIRIQTMTTSDTKDVA 120
           ELEPSSEGSPLLVPRQKYCESIYETRRRKTRTVMVGNVPLGSDHPIRIQTMTTSDTKDVA
Sbjct: 61  ELEPSSEGSPLLVPRQKYCESIYETRRRKTRTVMVGNVPLGSDHPIRIQTMTTSDTKDVA 120

Query: 121 KTVEEVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRV 180
           KTVEEVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRV
Sbjct: 121 KTVEEVMRIADKGADFVRITVQGRKEADACFEIKNTLVQKNYNIPLVADIHFAPTVALRV 180

Query: 181 AECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGT 240
           AECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGT
Sbjct: 181 AECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEKVFSPLVEKCKQYGRAMRIGT 240

Query: 241 NHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVA 300
           NHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVA
Sbjct: 241 NHGSLSDRIMSYYGDSPRGMVESALEFARICRKLDFHNFVFSMKASNPVIMVQAYRLLVA 300

Query: 301 EMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCR 360
           EMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCR
Sbjct: 301 EMYNLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTIRVSLTEPPEEEIDPCR 360

Query: 361 RLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMS 420
           RLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMS
Sbjct: 361 RLANLGTHAADLQIGVAPFEEKHRRYFDFQRRSGQLPLQKEGEEVDYRGVLHRDGSVLMS 420

Query: 421 VSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVEDAQARLALKRLVDISM 480
           VSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVEDAQARLALKRLVDISM
Sbjct: 421 VSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVEDAQARLALKRLVDISM 480

Query: 481 GVLTPLSEQLTKPLPHAIALVNVDELSSGAHKLLPEGTRLAVTLRGDESYEQLDLLKGVD 540
           GVLTPLSEQLTKPLPHAIALVNVDELSSGAHKLLPEGTRLAVTLRGDESYEQLDLLKGVD
Sbjct: 481 GVLTPLSEQLTKPLPHAIALVNVDELSSGAHKLLPEGTRLAVTLRGDESYEQLDLLKGVD 540

Query: 541 DITMLLHSVPYGEEKTGRVHAARRLFEYLETNGLNFPVIHHIEFPKSVNRDDXXXXXXXX 600
           DITMLLHSVPYGEEKTGRVHAARRLFEYLETNGLNFPVIHHIEFPKSVNRDD        
Sbjct: 541 DITMLLHSVPYGEEKTGRVHAARRLFEYLETNGLNFPVIHHIEFPKSVNRDDLVIGAGAN 600

Query: 601 XXXXXXXXXXXXXXXXXXXQEFEFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE 660
                              QEFEFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE
Sbjct: 601 VGALLVDGLGDGVLLEAADQEFEFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE 660

Query: 661 VSAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVQRGIAM 720
           VSAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVQRGIAM
Sbjct: 661 VSAQIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVQRGIAM 720

Query: 721 EGATDALIQLIKDHGRWVDPPVEE 744
           EGATDALIQLIKDHGRWVDPPVEE
Sbjct: 721 EGATDALIQLIKDHGRWVDPPVEE 744



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,393,274
Number of extensions: 1028566
Number of successful extensions: 2559
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2557
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 636
Effective length of database: 11,396,689
Effective search space: 7248294204
Effective search space used: 7248294204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)