BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0598300 Os02g0598300|AK105842
         (307 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0598300  Conserved hypothetical protein                      609   e-175

>Os02g0598300 Conserved hypothetical protein
          Length = 307

 Score =  609 bits (1570), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MSEASFPEDLLSLEMADRLEWLVEQKKIADMIFSEHRKVKDILASTDLPHAVLTGELDSQ 60
           MSEASFPEDLLSLEMADRLEWLVEQKKIADMIFSEHRKVKDILASTDLPHAVLTGELDSQ
Sbjct: 1   MSEASFPEDLLSLEMADRLEWLVEQKKIADMIFSEHRKVKDILASTDLPHAVLTGELDSQ 60

Query: 61  IHWLLNSLYQAKEDAARMQDESSAMLHKLASHESKLNSMHEEVDRLTIALLEEKQEKDIL 120
           IHWLLNSLYQAKEDAARMQDESSAMLHKLASHESKLNSMHEEVDRLTIALLEEKQEKDIL
Sbjct: 61  IHWLLNSLYQAKEDAARMQDESSAMLHKLASHESKLNSMHEEVDRLTIALLEEKQEKDIL 120

Query: 121 ANEHAELMSLYHAASDQLSVVSSRYTELVKAFAEVSDVQLEDHEILDGGKLVEQCLANIQ 180
           ANEHAELMSLYHAASDQLSVVSSRYTELVKAFAEVSDVQLEDHEILDGGKLVEQCLANIQ
Sbjct: 121 ANEHAELMSLYHAASDQLSVVSSRYTELVKAFAEVSDVQLEDHEILDGGKLVEQCLANIQ 180

Query: 181 GRAKSSPVECESFEKLQTQVYTLDQELTLCKIILEEDKADRSEMMRLSGELQRMVQETDA 240
           GRAKSSPVECESFEKLQTQVYTLDQELTLCKIILEEDKADRSEMMRLSGELQRMVQETDA
Sbjct: 181 GRAKSSPVECESFEKLQTQVYTLDQELTLCKIILEEDKADRSEMMRLSGELQRMVQETDA 240

Query: 241 LKNEKDSLQKELERVEEKSSLLREKLSMAVKKGKGLVQEREGLKQVLDEKKSDIEKLKHA 300
           LKNEKDSLQKELERVEEKSSLLREKLSMAVKKGKGLVQEREGLKQVLDEKKSDIEKLKHA
Sbjct: 241 LKNEKDSLQKELERVEEKSSLLREKLSMAVKKGKGLVQEREGLKQVLDEKKSDIEKLKHA 300

Query: 301 LDENRDI 307
           LDENRDI
Sbjct: 301 LDENRDI 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,848,817
Number of extensions: 333851
Number of successful extensions: 2117
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2115
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)