BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0596100 Os02g0596100|AK073510
(612 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0596100 GLE1-like family protein 1003 0.0
>Os02g0596100 GLE1-like family protein
Length = 612
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/612 (81%), Positives = 501/612 (81%)
Query: 1 MGFARVELRCPRALDPRPSWTLGDVLTELDALEATRRTAQPTPLKQPPEWASSGSVREKA 60
MGFARVELRCPRALDPRPSWTLGDVLTELDALEATRRTAQPTPLKQPPEWASSGSVREKA
Sbjct: 1 MGFARVELRCPRALDPRPSWTLGDVLTELDALEATRRTAQPTPLKQPPEWASSGSVREKA 60
Query: 61 FVMRVXXXXXXXXXXXXXXXXSRALVAKATGARFSCNXXXXXXXXXXXXXMDGRIAPYHL 120
FVMRV SRALVAKATGARFSCN MDGRIAPYHL
Sbjct: 61 FVMRVEEEDDTDEDDYDSDGESRALVAKATGARFSCNDLESSDAEESEDEMDGRIAPYHL 120
Query: 121 MEKRSLEKSILLELEREHHLKVQEEVRSKLSALEVCHQSEIQRTVSAFARLQKYAESRKE 180
MEKRSLEKSILLELEREHHLKVQEEVRSKLSALEVCHQSEIQRTVSAFARLQKYAESRKE
Sbjct: 121 MEKRSLEKSILLELEREHHLKVQEEVRSKLSALEVCHQSEIQRTVSAFARLQKYAESRKE 180
Query: 181 IDRRLDVHFQRKIAEVLDKHLSMVQRDHEQKSQIVERRIRDDAALEEAKRKEQAMKDEKI 240
IDRRLDVHFQRKIAEVLDKHLSMVQRDHEQKSQIVERRIRDDAALEEAKRKEQAMKDEKI
Sbjct: 181 IDRRLDVHFQRKIAEVLDKHLSMVQRDHEQKSQIVERRIRDDAALEEAKRKEQAMKDEKI 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKXXXXXXXXVAGTM 300
VSK VAGTM
Sbjct: 241 RQERAKQEAEARQKAAAKLAVEAQKAAAEAAAKEAAEAQKAAAEVSKSSQNSQNNVAGTM 300
Query: 301 RANKSEIKSELPGIKVFADHSXXXXXXXXXXXXDQVPANIHSSKEFSRYDRQIAKSIGKL 360
RANKSEIKSELPGIKVFADHS DQVPANIHSSKEFSRYDRQIAKSIGKL
Sbjct: 301 RANKSEIKSELPGIKVFADHSALEAELRRRALLDQVPANIHSSKEFSRYDRQIAKSIGKL 360
Query: 361 MPTTDSVKARAGELIKALDGQDCPRPIACRIFANKIISIVKSRNTKDKTFGNLAFACGYV 420
MPTTDSVKARAGELIKALDGQDCPRPIACRIFANKIISIVKSRNTKDKTFGNLAFACGYV
Sbjct: 361 MPTTDSVKARAGELIKALDGQDCPRPIACRIFANKIISIVKSRNTKDKTFGNLAFACGYV 420
Query: 421 MLLVTSQVPDAMDYLLAEFHRVCMYTVPKHLHALNAQVRNRDYYRLIGYQEENGQLESTE 480
MLLVTSQVPDAMDYLLAEFHRVCMYTVPKHLHALNAQVRNRDYYRLIGYQEENGQLESTE
Sbjct: 421 MLLVTSQVPDAMDYLLAEFHRVCMYTVPKHLHALNAQVRNRDYYRLIGYQEENGQLESTE 480
Query: 481 SYLTYVAAYVKLYAAMIQTEIRGVRHPHGLAEGWKWLAMFXXXXXXXXXXXXXXXXXXKV 540
SYLTYVAAYVKLYAAMIQTEIRGVRHPHGLAEGWKWLAMF KV
Sbjct: 481 SYLTYVAAYVKLYAAMIQTEIRGVRHPHGLAEGWKWLAMFLNTLPATTATACALHAFLKV 540
Query: 541 AGFALHKKYGSQFMKLLDVILRCFLPALKEQGSRIQAEAASNLQNYLTDKVYLEEPEGQY 600
AGFALHKKYGSQFMKLLDVILRCFLPALKEQGSRIQAEAASNLQNYLTDKVYLEEPEGQY
Sbjct: 541 AGFALHKKYGSQFMKLLDVILRCFLPALKEQGSRIQAEAASNLQNYLTDKVYLEEPEGQY 600
Query: 601 LAQQLLSKELFT 612
LAQQLLSKELFT
Sbjct: 601 LAQQLLSKELFT 612
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,086,861
Number of extensions: 514616
Number of successful extensions: 1719
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1717
Number of HSP's successfully gapped: 2
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)