BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0593500 Os02g0593500|AK067498
(572 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0593500 Phosphate transporter family protein 989 0.0
>Os02g0593500 Phosphate transporter family protein
Length = 572
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/572 (88%), Positives = 508/572 (88%)
Query: 1 MSQSSPFFSVXXXXXXXXXXXXXXXXXXXXPVAQLPPRIHGLRYYPSAIVSPAKTLNSHL 60
MSQSSPFFSV PVAQLPPRIHGLRYYPSAIVSPAKTLNSHL
Sbjct: 1 MSQSSPFFSVARAHAGAGGRAAAAALLLRHPVAQLPPRIHGLRYYPSAIVSPAKTLNSHL 60
Query: 61 SLPHATISSFANADNGSSGQADATXXXXXXXXXXXXXXMAKAFHISPRMAMSISVVIAFA 120
SLPHATISSFANADNGSSGQADAT MAKAFHISPRMAMSISVVIAFA
Sbjct: 61 SLPHATISSFANADNGSSGQADATESEEEQNGESELSEMAKAFHISPRMAMSISVVIAFA 120
Query: 121 ALTVPLAMQSVVFHGTNKMKALAYLTLLSGFYMAWNIGANDVANAMGTSVGSGALTLRQA 180
ALTVPLAMQSVVFHGTNKMKALAYLTLLSGFYMAWNIGANDVANAMGTSVGSGALTLRQA
Sbjct: 121 ALTVPLAMQSVVFHGTNKMKALAYLTLLSGFYMAWNIGANDVANAMGTSVGSGALTLRQA 180
Query: 181 VLTAAVLEFSGAFLMGTHVTSTMQKGILVASVFQGKDXXXXXXXXXXXXXXXTWLQVASS 240
VLTAAVLEFSGAFLMGTHVTSTMQKGILVASVFQGKD TWLQVASS
Sbjct: 181 VLTAAVLEFSGAFLMGTHVTSTMQKGILVASVFQGKDSLLFAGLLSSLAAAGTWLQVASS 240
Query: 241 YGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWVISPLMGAAVSFIVYKGIRR 300
YGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWVISPLMGAAVSFIVYKGIRR
Sbjct: 241 YGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWVISPLMGAAVSFIVYKGIRR 300
Query: 301 FVYSXXXXXXXXXXXXXXXVFTGVTAISFAAFPLSKTFSIAILQALACGAIGAVIVNRVI 360
FVYS VFTGVTAISFAAFPLSKTFSIAILQALACGAIGAVIVNRVI
Sbjct: 301 FVYSAPNPGQAAAAAAPIAVFTGVTAISFAAFPLSKTFSIAILQALACGAIGAVIVNRVI 360
Query: 361 QKQLGDLLSSEAEKIASADKANAQQVGFLSDIAGPTGAQLQIVYGVFGYMQVLSACFMSF 420
QKQLGDLLSSEAEKIASADKANAQQVGFLSDIAGPTGAQLQIVYGVFGYMQVLSACFMSF
Sbjct: 361 QKQLGDLLSSEAEKIASADKANAQQVGFLSDIAGPTGAQLQIVYGVFGYMQVLSACFMSF 420
Query: 421 AHGGNDVSNAIGPLAAALSILQGVASSAEIVIPTEVLAWGGFGIVAGLTMWGYRVIATIG 480
AHGGNDVSNAIGPLAAALSILQGVASSAEIVIPTEVLAWGGFGIVAGLTMWGYRVIATIG
Sbjct: 421 AHGGNDVSNAIGPLAAALSILQGVASSAEIVIPTEVLAWGGFGIVAGLTMWGYRVIATIG 480
Query: 481 KKITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGLNRVRAETVR 540
KKITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGLNRVRAETVR
Sbjct: 481 KKITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGLNRVRAETVR 540
Query: 541 EIVASWLVTIPVGAVLSIFYTLLFTKILAYFM 572
EIVASWLVTIPVGAVLSIFYTLLFTKILAYFM
Sbjct: 541 EIVASWLVTIPVGAVLSIFYTLLFTKILAYFM 572
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,677,222
Number of extensions: 509695
Number of successful extensions: 1778
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1771
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 466
Effective length of database: 11,501,117
Effective search space: 5359520522
Effective search space used: 5359520522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)