BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0593100 Os02g0593100|Os02g0593100
         (169 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0593100                                                      237   4e-63
Os03g0695450                                                       67   6e-12
Os10g0460000  Conserved hypothetical protein                       66   1e-11

>Os02g0593100 
          Length = 169

 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 130/169 (76%)

Query: 1   MRWHDNALGRGNEPSLSVRPKPGWVFTGCSSLASPRLTHRCSTIAQXXXXXXXXXXXXXX 60
           MRWHDNALGRGNEPSLSVRPKPGWVFTGCSSLASPRLTHRCSTIAQ              
Sbjct: 1   MRWHDNALGRGNEPSLSVRPKPGWVFTGCSSLASPRLTHRCSTIAQPLPTCGTTAPTPPA 60

Query: 61  SQPSCAEDRATPTGSSSSHRGRHLYXXXXXXXXXXXXXXXXXXXXXXXXXSIGCASRAKP 120
           SQPSCAEDRATPTGSSSSHRGRHLY                         SIGCASRAKP
Sbjct: 61  SQPSCAEDRATPTGSSSSHRGRHLYRRPRLITPRRPPPPPDAPLAPVRPPSIGCASRAKP 120

Query: 121 ASSPLTTPLAPCRPLLPSAVPLCAKPASDPSNRCRAARCGRLPRPRLAV 169
           ASSPLTTPLAPCRPLLPSAVPLCAKPASDPSNRCRAARCGRLPRPRLAV
Sbjct: 121 ASSPLTTPLAPCRPLLPSAVPLCAKPASDPSNRCRAARCGRLPRPRLAV 169



>Os03g0695450 
          Length = 499

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 12  NEPSLSVRP-KPGWVFTGCSSLASPRLTHRCSTIAQXXXXXXXXXXXXXXSQPSCAEDRA 70
            E ++ V P +P WVFT  +  A+PRLTHRCST  Q               QPS AEDRA
Sbjct: 85  EELTIVVGPARPDWVFTYRTPPANPRLTHRCSTTTQPLPTCGTPAPAPPAGQPSSAEDRA 144

Query: 71  TPTGSSSSHRGRHLYXXXXXXXXXXXXXXXXXXXXXXXXXSIGCASRAKPASSPLTTPLA 130
           TPTG SSSH+G HL                           +          SP   PLA
Sbjct: 145 TPTGISSSHQG-HLLLCRPCLSHRTGLLHRTRLSHRSGLPPLAAPLAPSRPPSPPPAPLA 203

Query: 131 PCRPLLPSAVPLCAKPASDPSN 152
           P RPLLPSAVPLC KP SDPS+
Sbjct: 204 PSRPLLPSAVPLCTKPVSDPSS 225



>Os10g0460000 Conserved hypothetical protein
          Length = 151

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 36/46 (78%)

Query: 1  MRWHDNALGRGNEPSLSVRPKPGWVFTGCSSLASPRLTHRCSTIAQ 46
          +R HDNAL RGN+ SLSVRP+PGWVFT  S  A+PRL HRCST  Q
Sbjct: 2  VRQHDNALRRGNDISLSVRPRPGWVFTRRSPPANPRLMHRCSTTTQ 47



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,934,059
Number of extensions: 209501
Number of successful extensions: 1282
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 4
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)