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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0593100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0438) R2 : 0.02
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.281 (0.0922) R2dN8 : 0.0258 R2N8 : 0.02
σ : 0.825
deviance : 312.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.92 0.8 3.09 0.57 0.212 1.26 0.52 0.537 0.428 2.42 0.02281 1487 -- --
289.43 0.792 3.07 0.595 0.0851 1.21 0.544 -- 0.442 2.22 0.04003 1548 -- --
289.99 0.793 3.09 0.459 0.0721 1.43 -- 1.12 0.421 4.31 0.22 1545 -- --
290.35 0.794 3.07 0.594 0.0698 1.25 -- -- 0.446 5.23 0.02 1561 -- --
290.13 0.793 3.09 0.485 -- 1.47 -- 1.12 0.431 -- 0.2205 1559 -- --
302.53 0.815 3.11 0.297 0.325 -- 0.462 -- 0.309 1.71 -- -- -- --
303.37 0.816 3.11 0.282 0.326 -- -- -- 0.307 1.73 -- -- -- --
290.54 0.794 3.08 0.593 -- 1.25 -- -- 0.441 -- 0.04 1577 -- --
297.89 0.804 3.09 -- 0.129 0.9 -- -- 0.352 3.43 0.3512 1566 -- --
309.82 0.822 3.1 0.296 -- -- -- -- 0.314 -- -- -- -- --
305.48 0.818 3.12 -- 0.331 -- -- -- 0.275 1.76 -- -- -- --
298.32 0.804 3.1 -- -- 0.996 -- -- 0.357 -- 0.36 1595 -- --
312.13 0.825 3.11 -- -- -- -- -- 0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 277.37 precipitation 0.1 270 > th dose independent rect. 2 1
2 277.37 precipitation 0.1 270 > th dose dependent rect. 2 1
3 282.49 temperature 30.0 4320 > th dose dependent rect. 8 1
17 282.70 wind 1.0 30 < th dose independent rect. 4 1
18 282.89 wind 1.0 30 < th dose dependent rect. 4 1
19 282.93 wind 1.0 10 < th dose independent rect. 3 6
21 283.23 wind 1.0 10 < th dose independent rect. 3 3
39 283.99 wind 1.0 10 < th dose dependent rect. 3 6
41 284.16 wind 3.0 10 > th dose independent rect. 9 1
46 285.61 precipitation 0.1 10 > th dose independent rect. 3 1
50 285.61 precipitation 0.1 10 > th dose dependent rect. 3 1
54 285.66 humidity 70.0 720 > th dose independent rect. 17 3
57 285.89 humidity 70.0 720 > th dose independent rect. 17 11
64 286.45 wind 1.0 43200 > th dose independent rect. 7 1
67 286.84 wind 1.0 1440 < th dose dependent rect. 7 1
71 287.04 wind 1.0 43200 < th dose independent rect. 7 1
72 287.08 wind 1.0 43200 < th dose dependent rect. 6 2
79 287.47 temperature 30.0 4320 > th dose independent rect. 8 1
96 287.87 radiation 1.0 1440 < th dose dependent rect. 16 2
102 288.17 radiation 1.0 1440 < th dose dependent rect. 15 9
104 288.18 radiation 20.0 1440 < th dose dependent rect. 20 9
106 288.20 radiation 1.0 1440 < th dose dependent rect. 15 11
114 288.33 radiation 10.0 1440 < th dose independent rect. 20 9
122 288.46 humidity 70.0 720 > th dose independent rect. 17 8
140 288.58 humidity 60.0 90 > th dose dependent rect. 15 19
142 288.60 temperature 20.0 90 < th dose independent rect. 16 6
148 288.71 radiation 1.0 1440 > th dose independent rect. 15 3
159 288.83 radiation 1.0 1440 < th dose independent rect. 16 1
161 288.85 radiation 1.0 1440 < th dose independent rect. 15 3
164 288.87 humidity 80.0 1440 < th dose dependent rect. 15 4
169 288.96 humidity 70.0 720 < th dose independent rect. 17 14
184 289.03 humidity 70.0 720 < th dose independent rect. 17 3
195 289.03 radiation 1.0 1440 < th dose dependent sin 16 NA
198 289.06 wind 1.0 10 < th dose dependent rect. 3 10
205 289.15 humidity 50.0 1440 > th dose dependent rect. 17 1
216 289.27 humidity 50.0 1440 > th dose dependent rect. 15 4
222 289.31 humidity 90.0 1440 < th dose dependent rect. 17 1
225 289.35 humidity 50.0 1440 > th dose dependent rect. 15 6
228 289.38 temperature 30.0 4320 < th dose independent rect. 24 9
234 289.41 humidity 70.0 720 > th dose independent rect. 17 6
236 289.45 temperature 20.0 90 < th dose dependent rect. 16 6
258 289.69 temperature 20.0 1440 > th dose dependent rect. 15 1
262 289.72 atmosphere 1005.0 10 < th dose dependent rect. 3 8
268 289.77 temperature 25.0 1440 < th dose independent rect. 16 1
269 289.77 radiation 10.0 10 > th dose independent rect. 9 1
289 289.85 temperature 30.0 720 < th dose independent rect. 18 1
307 289.90 radiation 30.0 1440 < th dose dependent rect. 24 5
310 289.90 wind 1.0 10 < th dose dependent rect. 3 15
321 289.93 wind 1.0 10 < th dose dependent rect. 3 13
323 289.94 temperature 25.0 1440 > th dose independent rect. 16 1
325 289.94 wind 1.0 10 < th dose independent rect. 24 9
327 289.95 temperature 25.0 1440 < th dose independent rect. 15 3
339 289.98 humidity 80.0 4320 > th dose independent rect. 15 1
341 289.98 humidity 80.0 1440 < th dose dependent rect. 15 17
377 290.05 temperature 25.0 1440 > th dose independent rect. 15 3
380 290.06 radiation 1.0 90 < th dose independent rect. 8 3
381 290.06 radiation 1.0 90 < th dose dependent rect. 8 3
397 290.09 radiation 1.0 1440 < th dose independent rect. 15 9
406 290.13 radiation 1.0 1440 < th dose independent rect. 15 11
444 290.20 wind 1.0 1440 > th dose independent rect. 9 3
452 290.21 temperature 20.0 90 < th dose dependent rect. 12 10
459 290.23 wind 1.0 1440 < th dose independent rect. 7 1
463 290.23 atmosphere 1010.0 30 < th dose dependent rect. 9 1
478 290.26 radiation 10.0 14400 > th dose independent rect. 5 1
495 290.27 temperature 20.0 10 > th dose independent rect. 3 3
501 290.30 radiation 10.0 1440 < th dose independent rect. 22 7
513 290.32 radiation 20.0 1440 < th dose dependent rect. 22 7
524 290.35 radiation 10.0 1440 < th dose independent rect. 24 5
526 290.36 wind 5.0 14400 < th dose independent rect. 15 1
554 290.43 humidity 70.0 720 > th dose independent rect. 17 17
572 290.48 wind 5.0 43200 > th dose independent rect. 15 1
587 290.49 temperature 30.0 4320 < th dose independent rect. 19 14
588 290.49 humidity 80.0 90 > th dose independent rect. 8 14
591 290.49 radiation 1.0 270 < th dose dependent rect. 5 13
593 290.50 temperature 30.0 720 < th dose independent rect. 18 10
629 290.55 temperature 20.0 10 < th dose dependent rect. 17 6
637 290.57 atmosphere 1010.0 14400 > th dose dependent rect. 4 1
647 290.58 atmosphere 1010.0 14400 > th dose dependent rect. 8 1
650 290.59 humidity 50.0 43200 > th dose independent rect. 18 1
654 290.59 humidity 90.0 90 > th dose dependent rect. 16 2
661 290.60 temperature 30.0 4320 < th dose independent rect. 7 2
667 290.61 wind 1.0 30 > th dose dependent rect. 9 1
671 290.61 atmosphere 1010.0 14400 > th dose dependent rect. 4 5
676 290.62 humidity 90.0 90 > th dose independent rect. 16 2
756 290.66 temperature 15.0 14400 < th dose dependent rect. 24 1
758 290.66 atmosphere 1010.0 14400 > th dose dependent rect. 1 1
784 290.70 humidity 90.0 43200 < th dose independent rect. 20 1
810 290.74 humidity 80.0 4320 < th dose independent rect. 15 1
856 290.78 atmosphere 1010.0 14400 > th dose dependent sin 6 NA
861 290.79 wind 5.0 43200 > th dose independent rect. 15 3
871 290.80 wind 5.0 43200 < th dose independent rect. 15 3
900 290.84 humidity 50.0 43200 < th dose independent rect. 18 1
926 290.86 temperature 10.0 30 > th dose dependent rect. 10 23
941 290.89 radiation 1.0 1440 > th dose independent sin 16 NA
944 290.89 humidity 90.0 43200 < th dose independent rect. 19 3
946 290.89 atmosphere 1010.0 14400 < th dose independent rect. 24 8
948 290.89 atmosphere 1010.0 14400 > th dose independent rect. 24 12
959 290.90 atmosphere 1010.0 14400 > th dose independent rect. 24 9
961 290.90 atmosphere 1010.0 14400 < th dose independent rect. 24 11
977 290.91 atmosphere 1010.0 14400 > th dose independent rect. 21 11
988 290.91 atmosphere 1015.0 30 < th dose dependent rect. 17 17
990 290.92 atmosphere 1010.0 14400 > th dose independent sin 8 NA