BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0591900 Os02g0591900|AK060750
         (379 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0591900  Conserved hypothetical protein                      725   0.0  

>Os02g0591900 Conserved hypothetical protein
          Length = 379

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/379 (97%), Positives = 370/379 (97%)

Query: 1   VWFRVNELLPLELQKNLPDGASSGISMSLQDEGAYKRTHVMXXXXXXXXXIEQSNSSLSH 60
           VWFRVNELLPLELQKNLPDGASSGISMSLQDEGAYKRTHVM         IEQSNSSLSH
Sbjct: 1   VWFRVNELLPLELQKNLPDGASSGISMSLQDEGAYKRTHVMPRRNPPPPPIEQSNSSLSH 60

Query: 61  GSSKAGDAPLGAFWATQHAQGSQVADNRNSLFDEEPIKPSPSSKHNQSRGDISISAPGDR 120
           GSSKAGDAPLGAFWATQHAQGSQVADNRNSLFDEEPIKPSPSSKHNQSRGDISISAPGDR
Sbjct: 61  GSSKAGDAPLGAFWATQHAQGSQVADNRNSLFDEEPIKPSPSSKHNQSRGDISISAPGDR 120

Query: 121 HGRSGQAVRGTPSNSVSNNGLASGANTNLFMESQSSLKTKESQPKSEKDPFNSFVADFEA 180
           HGRSGQAVRGTPSNSVSNNGLASGANTNLFMESQSSLKTKESQPKSEKDPFNSFVADFEA
Sbjct: 121 HGRSGQAVRGTPSNSVSNNGLASGANTNLFMESQSSLKTKESQPKSEKDPFNSFVADFEA 180

Query: 181 NNLHSGTNVASKESELEAEVSNLKEQLKKTSSEKAEMTAKFEKLSAICRSQRQEIQELKR 240
           NNLHSGTNVASKESELEAEVSNLKEQLKKTSSEKAEMTAKFEKLSAICRSQRQEIQELKR
Sbjct: 181 NNLHSGTNVASKESELEAEVSNLKEQLKKTSSEKAEMTAKFEKLSAICRSQRQEIQELKR 240

Query: 241 TLAETTPPSSKVSSRLPDSGPQRKEKIEGTVWELEQGMLANSLPSSEAKTWQAFPDPKSQ 300
           TLAETTPPSSKVSSRLPDSGPQRKEKIEGTVWELEQGMLANSLPSSEAKTWQAFPDPKSQ
Sbjct: 241 TLAETTPPSSKVSSRLPDSGPQRKEKIEGTVWELEQGMLANSLPSSEAKTWQAFPDPKSQ 300

Query: 301 PAQVRPKVDHSTNGAQNLARNANSRQSPDGWGFGPDSFRTSPGSTAAQINRPTAQGSSSQ 360
           PAQVRPKVDHSTNGAQNLARNANSRQSPDGWGFGPDSFRTSPGSTAAQINRPTAQGSSSQ
Sbjct: 301 PAQVRPKVDHSTNGAQNLARNANSRQSPDGWGFGPDSFRTSPGSTAAQINRPTAQGSSSQ 360

Query: 361 RFSSGAAKKVEQPSGWAGF 379
           RFSSGAAKKVEQPSGWAGF
Sbjct: 361 RFSSGAAKKVEQPSGWAGF 379



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.121    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,985,130
Number of extensions: 539973
Number of successful extensions: 1746
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 157 (65.1 bits)