BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0577900 Os02g0577900|J065164K11
         (120 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0577900  Conserved hypothetical protein                      125   9e-30

>Os02g0577900 Conserved hypothetical protein
          Length = 120

 Score =  125 bits (313), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 65/87 (74%)

Query: 18  GEPPMVKEWLRLLGHLVTGCSPRQRCLGKLRGRAVDAGQXXXXXXXXXXXXXXXXXXXXX 77
           GEPPMVKEWLRLLGHLVTGCSPRQRCLGKLRGRAVDAGQ                     
Sbjct: 18  GEPPMVKEWLRLLGHLVTGCSPRQRCLGKLRGRAVDAGQGHVLVDLLAAAAGDACDRGRR 77

Query: 78  XDEQRAAHYVGDRGVAPQRRQWGGATM 104
            DEQRAAHYVGDRGVAPQRRQWGGATM
Sbjct: 78  VDEQRAAHYVGDRGVAPQRRQWGGATM 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,789,536
Number of extensions: 64522
Number of successful extensions: 142
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)