BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0568100 Os02g0568100|AK107582
         (212 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0568100  Similar to Non-phototropic hypocotyl 3              231   3e-61

>Os02g0568100 Similar to Non-phototropic hypocotyl 3
          Length = 212

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 125/173 (72%)

Query: 40  FFHPLLHADADVPXXXXLPILXXXXXXXXXXXXSTCFWSASISCWSSRYLAXXXXXXXXX 99
           FFHPLLHADADVP    LPIL            STCFWSASISCWSSRYLA         
Sbjct: 40  FFHPLLHADADVPCCCCLPILAAAGDGAPPPRPSTCFWSASISCWSSRYLAFMLSSSNLS 99

Query: 100 XXXXXXAAAHPSWNDCGVPSSSCRRVVGIAGAASAPGXXXXXXXXXXXXXXXXXILTCSV 159
                 AAAHPSWNDCGVPSSSCRRVVGIAGAASAPG                 ILTCSV
Sbjct: 100 VLMSFFAAAHPSWNDCGVPSSSCRRVVGIAGAASAPGAEDDDLSAAEELASALLILTCSV 159

Query: 160 KSTCTTTRSGSLSFCAACMHASNDSFWQSITLHSLFLSCSVSVGCACKSIDRH 212
           KSTCTTTRSGSLSFCAACMHASNDSFWQSITLHSLFLSCSVSVGCACKSIDRH
Sbjct: 160 KSTCTTTRSGSLSFCAACMHASNDSFWQSITLHSLFLSCSVSVGCACKSIDRH 212



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.130    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,811,375
Number of extensions: 133489
Number of successful extensions: 314
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)