Os02g0568100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Non-phototropic hypocotyl 3.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0568100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Non-phototropic hypocotyl 3.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.31 | 0.713 | 2.97 | 0.15 | 0.196 | 3.9 | -0.0839 | -6.35 | 0.0683 | 5.91 | 0.1 | 10 | 5 | 3 |
| 239.19 | 0.72 | 2.97 | 0.149 | 0.2 | 3.65 | -0.228 | -- | 0.0645 | 5.8 | 0.1394 | 11 | 5.19 | 2.74 |
| 234.32 | 0.713 | 2.97 | 0.15 | 0.195 | 3.91 | -- | -6.39 | 0.0686 | 5.93 | 0.112 | 10 | 5.3 | 3.31 |
| 239.31 | 0.72 | 2.97 | 0.148 | 0.198 | 3.65 | -- | -- | 0.0652 | 5.81 | 0.1484 | 10 | 5.6 | 3.44 |
| 236.29 | 0.716 | 2.98 | 0.156 | -- | 3.99 | -- | -6.42 | 0.0737 | -- | 0.1427 | 10 | 5.5 | 3.59 |
| 265.51 | 0.764 | 2.98 | 0.152 | 0.262 | -- | -0.212 | -- | 0.0431 | 5.96 | -- | -- | -- | -- |
| 265.62 | 0.763 | 2.98 | 0.15 | 0.261 | -- | -- | -- | 0.044 | 6.04 | -- | -- | -- | -- |
| 241.33 | 0.724 | 2.98 | 0.153 | -- | 3.74 | -- | -- | 0.0704 | -- | 0.208 | 11 | 5.56 | 3.67 |
| 239.89 | 0.721 | 2.98 | -- | 0.2 | 3.65 | -- | -- | 0.0488 | 5.77 | 0.1875 | 11 | 5.61 | 3.75 |
| 269.15 | 0.767 | 2.98 | 0.158 | -- | -- | -- | -- | 0.0499 | -- | -- | -- | -- | -- |
| 266.22 | 0.763 | 2.98 | -- | 0.263 | -- | -- | -- | 0.0273 | 6.01 | -- | -- | -- | -- |
| 241.95 | 0.724 | 2.98 | -- | -- | 3.74 | -- | -- | 0.0533 | -- | 0.2342 | 12 | 5.55 | 3.93 |
| 269.81 | 0.767 | 2.98 | -- | -- | -- | -- | -- | 0.0324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.31 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 3 |
| 17 | 234.31 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 33 | 234.93 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 34 | 235.12 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 64 | 237.12 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 110 | 238.51 | wind | 3.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 188 | 244.22 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 19 |
| 190 | 244.22 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 200 | 244.70 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 223 | 246.06 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 231 | 246.87 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 234 | 246.87 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 237 | 247.50 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 241 | 247.86 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 244 | 247.92 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 247 | 248.10 | radiation | 10.0 | 30 | < th | dose independent | rect. | 12 | 3 |
| 262 | 248.35 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 22 | 2 |
| 282 | 248.88 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 285 | 249.00 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 299 | 249.74 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 317 | 250.08 | precipitation | 0.1 | 10 | > th | dose independent | sin | 0 | NA |
| 319 | 250.20 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 0 | NA |
| 330 | 250.44 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 334 | 250.50 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 344 | 250.73 | precipitation | 0.1 | 10 | < th | dose independent | sin | 0 | NA |
| 345 | 250.73 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 0 | NA |
| 361 | 251.20 | wind | 5.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 386 | 251.95 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 415 | 252.65 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 463 | 253.13 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 4 |
| 466 | 253.14 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 2 | 4 |
| 495 | 253.53 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 10 | 4 |
| 574 | 254.19 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 8 |
| 612 | 254.40 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 683 | 254.76 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 7 |
| 697 | 254.82 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 711 | 254.83 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 12 | 3 |
| 721 | 254.86 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 808 | 255.36 | humidity | 70.0 | 30 | > th | dose independent | rect. | 12 | 2 |
| 859 | 255.61 | humidity | 80.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 874 | 255.69 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 20 | 1 |
| 885 | 255.73 | radiation | 30.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 924 | 255.94 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 12 | 2 |
| 929 | 255.97 | precipitation | 0.1 | 90 | > th | dose independent | sin | 7 | NA |
| 935 | 255.99 | precipitation | 0.1 | 90 | < th | dose independent | sin | 7 | NA |
| 941 | 255.99 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 7 | NA |