BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0542500 Os02g0542500|AK109859
         (316 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0542500  Conserved hypothetical protein                       83   2e-16

>Os02g0542500 Conserved hypothetical protein
          Length = 316

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 50/99 (50%)

Query: 1  MGACATKPGDLKVKGGEAPLVKEDXXXXXXXXXXEEKEKNVDXXXXXXXXXXXXXXXXXX 60
          MGACATKPGDLKVKGGEAPLVKED          EEKEKNVD                  
Sbjct: 1  MGACATKPGDLKVKGGEAPLVKEDAAVAPSPPAAEEKEKNVDEAPAAAAAAVVVAAVEGE 60

Query: 61 XXXXXRRRSLSDLLKEDXXXXXXXXXXXXXXXXTKAVET 99
               RRRSLSDLLKED                TKAVET
Sbjct: 61 PAEAGRRRSLSDLLKEDAESEGSEAAPAPSAEATKAVET 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.302    0.122    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,990,172
Number of extensions: 28953
Number of successful extensions: 13
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 156 (64.7 bits)