BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0541300 Os02g0541300|013-085-E05
         (207 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0541300  Similar to Histidine decarboxylase (Serine dec...   435   e-123
Os04g0134200                                                      277   4e-75
Os11g0473900                                                      243   5e-65
Os10g0105700  Ferritin/ribonucleotide reductase-like family ...   159   1e-39

>Os02g0541300 Similar to Histidine decarboxylase (Serine decarboxylase)
          Length = 207

 Score =  435 bits (1119), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   YIHCDGALFGLMIPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINRLSS 60
           YIHCDGALFGLMIPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINRLSS
Sbjct: 1   YIHCDGALFGLMIPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINRLSS 60

Query: 61  NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLKEAGIG 120
           NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLKEAGIG
Sbjct: 61  NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLKEAGIG 120

Query: 121 AMLNELSSTVVFERPKDEEFVRRWQLACEGNIAHVVVMPSVTIDKLDYFLNELTEKRATW 180
           AMLNELSSTVVFERPKDEEFVRRWQLACEGNIAHVVVMPSVTIDKLDYFLNELTEKRATW
Sbjct: 121 AMLNELSSTVVFERPKDEEFVRRWQLACEGNIAHVVVMPSVTIDKLDYFLNELTEKRATW 180

Query: 181 YQDGSCQPPCLAKDVGEENCLCSIHKK 207
           YQDGSCQPPCLAKDVGEENCLCSIHKK
Sbjct: 181 YQDGSCQPPCLAKDVGEENCLCSIHKK 207



>Os04g0134200 
          Length = 424

 Score =  277 bits (708), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 129/210 (61%), Positives = 160/210 (76%), Gaps = 10/210 (4%)

Query: 1   YIHCDGALFGLMIPFVK----KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHIN 56
           YIHCD AL GLM+PF+K    KAPK++FKKPIGS+ +SGHKF+GCP+PCGV ITRL  IN
Sbjct: 212 YIHCDSALVGLMMPFIKQVNPKAPKLTFKKPIGSICISGHKFIGCPIPCGVLITRLMDIN 271

Query: 57  R-LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLK 115
             +S+N+EY++S D TI GSRNGHAPIFLWY L R GY G  K V+ CL+NA YL  RL+
Sbjct: 272 HVMSTNIEYISSNDTTIAGSRNGHAPIFLWYALKRIGYNGLCKTVENCLKNAQYLALRLR 331

Query: 116 EAGIGAMLNELSSTVVFERPKDEEFVRRWQLACEGNIAHVVVMPSVTIDKLDYFLNELTE 175
           E G+   LN LS TVVFERP DE FVR+WQLAC+G IAHVVVMP+V++++++ FL E T+
Sbjct: 332 EMGVSVFLNALSITVVFERPNDETFVRKWQLACQGKIAHVVVMPNVSLERINMFLEEFTK 391

Query: 176 KRATWYQDGSCQPPCLAKDVGEENCLCSIH 205
            R   +QD      C+A DV +ENCLCS+H
Sbjct: 392 SRIALHQD-----KCVAGDVSQENCLCSLH 416



>Os11g0473900 
          Length = 437

 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 138/178 (77%), Gaps = 1/178 (0%)

Query: 1   YIHCDGALFGLMIPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINRL-S 59
           YIHCDGAL GLM+PF+K+APKV+F KPIGS+SVSGHK +GCP PCGV I RL+ I+ L S
Sbjct: 247 YIHCDGALAGLMLPFIKQAPKVTFIKPIGSISVSGHKLLGCPTPCGVVINRLKDIDVLKS 306

Query: 60  SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLKEAGI 119
           +N+EY+AS D TI GSRNG +PIFLWY L   GY G Q+E++ CLRNA YL  RL+  GI
Sbjct: 307 TNIEYIASNDVTISGSRNGQSPIFLWYKLKSMGYEGIQREIEACLRNACYLTVRLRNVGI 366

Query: 120 GAMLNELSSTVVFERPKDEEFVRRWQLACEGNIAHVVVMPSVTIDKLDYFLNELTEKR 177
            A +N  S  V+FE+PKDE F+++WQLAC GN+AHVVVMP V+ + L  F+ EL EKR
Sbjct: 367 SAFMNSKSIIVIFEKPKDEMFMQKWQLACAGNVAHVVVMPHVSFEMLGIFVEELAEKR 424



>Os10g0105700 Ferritin/ribonucleotide reductase-like family protein
          Length = 219

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 85/98 (86%), Gaps = 1/98 (1%)

Query: 14  PFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINRLSSNVEYLASRDATIM 73
           PF K APKVSFKKPIGS+SVSGHKF+GCPMPCGV ITRLEH   LS+++EY+ASRD+TI 
Sbjct: 111 PFAK-APKVSFKKPIGSISVSGHKFLGCPMPCGVVITRLEHAEVLSTDIEYIASRDSTIT 169

Query: 74  GSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLK 111
           GSRNGHAPIFLWYTL++KGY+G  KEV  C+ NA YL+
Sbjct: 170 GSRNGHAPIFLWYTLSKKGYKGLLKEVHICMGNARYLE 207



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,171,095
Number of extensions: 272439
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 4
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)