Os02g0541300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidine decarboxylase (Serine decarboxylase).
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Os02g0541300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine decarboxylase (Serine decarboxylase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.16 | 0.521 | 12.8 | 0.581 | 2.48 | 0.95 | 2 | -2.28 | 0.516 | 16 | 18.74 | 1349 | -- | -- |
| 134.87 | 0.541 | 12.8 | 0.419 | 2.46 | 0.992 | 1.74 | -- | 0.502 | 16 | 19.5 | 1370 | -- | -- |
| 134.12 | 0.539 | 12.8 | 0.601 | 2.49 | 0.952 | -- | -2.04 | 0.525 | 15.9 | 18.69 | 1383 | -- | -- |
| 143.43 | 0.558 | 12.8 | 0.412 | 2.45 | 0.974 | -- | -- | 0.491 | 15.8 | 19.5 | 1385 | -- | -- |
| 448.67 | 0.992 | 12.8 | 0.116 | -- | -1 | -- | -0.559 | 0.2 | -- | 18.69 | 1383 | -- | -- |
| 163.49 | 0.599 | 12.8 | 0.254 | 2.55 | -- | 1.85 | -- | 0.224 | 15.8 | -- | -- | -- | -- |
| 173.53 | 0.617 | 12.8 | 0.281 | 2.56 | -- | -- | -- | 0.235 | 15.7 | -- | -- | -- | -- |
| 447.43 | 0.989 | 12.8 | 0.129 | -- | -1.02 | -- | -- | 0.214 | -- | 17.32 | 1301 | -- | -- |
| 147.2 | 0.565 | 12.8 | -- | 2.45 | 0.975 | -- | -- | 0.49 | 15.9 | 19.51 | 1388 | -- | -- |
| 535.82 | 1.08 | 12.8 | 0.175 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 175.62 | 0.62 | 12.8 | -- | 2.55 | -- | -- | -- | 0.203 | 15.7 | -- | -- | -- | -- |
| 447.87 | 0.989 | 12.8 | -- | -- | -1.02 | -- | -- | 0.2 | -- | 17.32 | 1301 | -- | -- |
| 536.62 | 1.08 | 12.8 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.52 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 122.12 | radiation | 20 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 6 | 123.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 14 | 124.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 19 | 124.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 47 | 125.52 | radiation | 20 | 1440 | < th | dose dependent | sin | 0 | NA |
| 50 | 125.58 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 53 | 125.64 | radiation | 20 | 1440 | < th | dose independent | sin | 0 | NA |
| 59 | 125.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 71 | 125.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 73 | 125.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 74 | 125.82 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 77 | 125.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 83 | 125.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 86 | 125.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 92 | 125.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 124 | 125.99 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 126 | 125.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 130 | 126.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 134 | 126.01 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 140 | 126.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 153 | 126.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 154 | 126.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 313 | 126.57 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 320 | 126.57 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 329 | 126.59 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 489 | 127.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 492 | 127.39 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |