BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0538000 Os02g0538000|AK058738
(674 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0538000 Similar to Threonyl-tRNA synthetase 1237 0.0
Os08g0295300 Similar to Threonyl-tRNA synthetase, cytoplasm... 413 e-115
AK107621 280 2e-75
>Os02g0538000 Similar to Threonyl-tRNA synthetase
Length = 674
Score = 1237 bits (3200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/674 (90%), Positives = 609/674 (90%)
Query: 1 MAAAVSAPXXXXXXXXXXXXXXXXXXXXYPAGFSRGLSSVSFGLPRXXXXXXXXXXXXXX 60
MAAAVSAP YPAGFSRGLSSVSFGLPR
Sbjct: 1 MAAAVSAPLLRFHHHHRCLLRHSSSPRRYPAGFSRGLSSVSFGLPRSTTTAARSTASPSA 60
Query: 61 XXXXXXXXXXXXXXXXXXDGKGDGIGEEERVVLPTNESSDRLLRIRHTCAHVMAMAVQKL 120
DGKGDGIGEEERVVLPTNESSDRLLRIRHTCAHVMAMAVQKL
Sbjct: 61 PSAAAAEATDAASAQAGSDGKGDGIGEEERVVLPTNESSDRLLRIRHTCAHVMAMAVQKL 120
Query: 121 FPNSKVTIGPWIDNGFYYDFDMEPLTDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKR 180
FPNSKVTIGPWIDNGFYYDFDMEPLTDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKR
Sbjct: 121 FPNSKVTIGPWIDNGFYYDFDMEPLTDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKR 180
Query: 181 IEALNEPYKLEILEGIKEDPITIYHIGEEWWDLCAGPHVESTGKIDRRAVELESVAGAYW 240
IEALNEPYKLEILEGIKEDPITIYHIGEEWWDLCAGPHVESTGKIDRRAVELESVAGAYW
Sbjct: 181 IEALNEPYKLEILEGIKEDPITIYHIGEEWWDLCAGPHVESTGKIDRRAVELESVAGAYW 240
Query: 241 RGDESNQMLQRIYGTAWETEDQLKAYIHFKEEAKXXXXXXXXXXXXXFSIQEDAGGGLVF 300
RGDESNQMLQRIYGTAWETEDQLKAYIHFKEEAK FSIQEDAGGGLVF
Sbjct: 241 RGDESNQMLQRIYGTAWETEDQLKAYIHFKEEAKRRDHRRLGLDLDLFSIQEDAGGGLVF 300
Query: 301 WHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVED 360
WHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVED
Sbjct: 301 WHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVED 360
Query: 361 ELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDA 420
ELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDA
Sbjct: 361 ELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDA 420
Query: 421 HIFCLEDQIKDEIRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLALKDA 480
HIFCLEDQIKDEIRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLALKDA
Sbjct: 421 HIFCLEDQIKDEIRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLALKDA 480
Query: 481 LEDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTVQVDFNLPERFDITYVNSNSEK 540
LEDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTVQVDFNLPERFDITYVNSNSEK
Sbjct: 481 LEDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTVQVDFNLPERFDITYVNSNSEK 540
Query: 541 KRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPIQARILPVTDNELQYCNEVASELKS 600
KRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPIQARILPVTDNELQYCNEVASELKS
Sbjct: 541 KRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPIQARILPVTDNELQYCNEVASELKS 600
Query: 601 KGIRAEVCHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFF 660
KGIRAEVCHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFF
Sbjct: 601 KGIRAEVCHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFF 660
Query: 661 RRIQLAIANKSSSL 674
RRIQLAIANKSSSL
Sbjct: 661 RRIQLAIANKSSSL 674
>Os08g0295300 Similar to Threonyl-tRNA synthetase, cytoplasmic (EC 6.1.1.3)
(Threonine--tRNA ligase) (ThrRS)
Length = 745
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/582 (38%), Positives = 343/582 (58%), Gaps = 21/582 (3%)
Query: 95 TNESSDRLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID--NGFYYD--FDMEPLTDKDL 150
+NE D H+ AH++ ++++ + K+ IGP GFYYD ++ L +
Sbjct: 174 SNEGRDTFW---HSSAHILGESLERAY-GCKLCIGPCTTRGEGFYYDAYYNDLTLNETHF 229
Query: 151 KRIKKEMDRIIRKNLPLVREEVSREEAQKRIEALNE-PYKLEILEGIKED-PITIYHIGE 208
I + + + + P R EVSR EA +E E +K+EI+ + ED IT+Y G
Sbjct: 230 GIIDAQAQKAVAEKQPFERIEVSRAEA---LEMFAENKFKVEIINELPEDKTITVYRCGP 286
Query: 209 EWWDLCAGPHVESTGKIDRRAVELESVAGAYWRGDESNQMLQRIYGTAWETEDQLKAYIH 268
DLC GPH+ +T + +A + +YWRG + LQR+YG ++ +LK Y H
Sbjct: 287 -LVDLCRGPHIPNTSFV--KAFACLKASSSYWRGKADRESLQRVYGISFPDSKRLKEYKH 343
Query: 269 FKEEAKXXXXXXXXXXXXXFSIQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHLQRGYDLL 328
EEAK F + + G F+ P GAII + L D +Q + RGY +
Sbjct: 344 LLEEAKKRDHRLLGQTQDLFFFHQLSPGS-CFFLPHGAIIYNKLMDFLRQQYRDRGYQEV 402
Query: 329 YTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKLHSYRDFP 388
+P++ +LW+ SGH YKENM+ ++E + + L+PMNCP H L+++ ++ SYR+ P
Sbjct: 403 LSPNIYNMQLWETSGHAANYKENMF-VFEIEKQEFGLKPMNCPGHCLMFEHRVRSYRELP 461
Query: 389 IRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEQILGQFG 448
+R+A+ G ++R ELSG+L GL RVR F QDDAHIFC E QIKDE++ VLD + FG
Sbjct: 462 LRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRESQIKDEVKAVLDFINYVYEIFG 521
Query: 449 FRYYEINLSTRPEKSVGSDDIWEKATLALKDALEDKGWEYKVDEGGGAFYGPKIDLKIED 508
F+ YE+ LSTRPEK +G + W KA L +AL + G ++++EG GAFYGPKID+ + D
Sbjct: 522 FK-YELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDGAFYGPKIDIGVFD 580
Query: 509 ALGRKWQCSTVQVDFNLPERFDITYVNSNSEK-KRPIMIHRAILGSLERFFGVLIEHYAG 567
AL RK+QC+T+Q+DF LP RF +TY + K +RP+MIHRAILGS+ER F +L+EHY G
Sbjct: 581 ALKRKFQCATLQLDFQLPLRFKLTYSAEDEAKLERPVMIHRAILGSVERMFAILLEHYNG 640
Query: 568 DFPLWLAPIQARILPVTDNELQYCNEVASELKSKGIRAEVCHGER-LPKLIRNAETKKVP 626
+PLWL+P QA + ++ N ++Y +V + + G + +R + K +R A+ +
Sbjct: 641 KWPLWLSPRQAIVCSISSNSVEYAKQVRARIHEAGFHVAIDETDRTIQKKVREAQLAQFN 700
Query: 627 LMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFFRRIQLAIA 668
+ VVG +E + +++R R E+ T+ +D+ R + +A
Sbjct: 701 YILVVGAQEAETGQVSVRVRDKAELATVSIDDIITRFKEEVA 742
>AK107621
Length = 528
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/414 (37%), Positives = 229/414 (55%), Gaps = 58/414 (14%)
Query: 290 IQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYK 349
+ D+ G F P G + +E + ++ GYD + +P + K LWK SGH D Y+
Sbjct: 72 LTHDSSPGTPFVLPHGMRLARKVERVVRDLYDVYGYDEVQSPQLYKTSLWKRSGHWDNYR 131
Query: 350 ENMYN-----------------------------QMDVEDELYQLRPMNCPYHILVYKRK 380
++M+ + +VEDE + L+PMNCP H +++ +
Sbjct: 132 DDMFAAEGYKERLARTSVPASSVDDRSACCSIHAETEVEDETFGLKPMNCPGHCVIFASQ 191
Query: 381 LHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLT 440
SYRD PIR AE ++R E SG+L GL RVR F QDDAH+FC DQ++ EI +L +
Sbjct: 192 ERSYRDLPIRYAEFSPLHRNEASGALTGLTRVRRFHQDDAHVFCTPDQVEAEIDAMLQML 251
Query: 441 EQILGQFGFRYYEINLSTRPEKS-VGSDDIWEKATLALKDALEDKGWEYKVDEGGGAFYG 499
FGF +E+ LSTRP + +GS WE+A L++AL+ G +++++EG AFYG
Sbjct: 252 TSAYDTFGFAAFELVLSTRPHDAFIGSVQEWERAEAGLREALDKSGRKWELNEGDVAFYG 311
Query: 500 PKIDLKIEDALGRKWQCSTVQVDFNLPERFDITYVNSNS----EKKRPIMIHRAILGSLE 555
PKID+++ D GR+ Q +T+Q+DF LP RF+++Y + N+ E+ P+MIHRAILGS+E
Sbjct: 312 PKIDIRLVDGQGRRHQTATIQLDFQLPRRFELSYADPNATQTGERSTPVMIHRAILGSVE 371
Query: 556 RFFGVLIEHYAGDFPLWLAPIQARILPVTDNELQ---YCNEVASELKSKGIRAEV----- 607
RF +LIE AG +P WL+P QA +LP + Y +A L S GI +
Sbjct: 372 RFMAILIEQTAGWWPFWLSPRQAIVLPAKTGSAELDAYAARIAKYL-SLGIHPDAEASQS 430
Query: 608 ---------------CHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSR 646
GE+L KL+R A+ + + VVG +E+Q +T+T+R R
Sbjct: 431 SERHLQRFYVDVEANPQGEKLGKLVRKAQLARYNYILVVGEREMQTQTVTVRKR 484
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,300,668
Number of extensions: 882985
Number of successful extensions: 1775
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1764
Number of HSP's successfully gapped: 3
Length of query: 674
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 566
Effective length of database: 11,396,689
Effective search space: 6450525974
Effective search space used: 6450525974
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)