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Os02g0538000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Threonyl-tRNA synthetase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0146) R2 : 0.736
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.24 (0.0362) R2dC : 0.678 R2C : 0.659
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.313 (0.0307) R2dN8 : 0.0775 R2N8 : 0.0583
σ : 0.275
deviance : 34.68
__
_____
C
peak time of C : 21.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.41 0.259 13.6 0.368 1.23 0.0181 -0.505 1.24 -0.228 21.1 19.34 1807 -- --
32.07 0.264 13.7 0.353 1.27 -0.302 -0.75 -- -0.226 21.1 17.02 4825 -- --
31.25 0.26 13.6 0.374 1.23 0.00372 -- 1.27 -0.23 21.2 19.08 1702 -- --
32.17 0.264 13.7 0.382 1.25 -0.395 -- -- -0.233 21.2 15.7 4791 -- --
114.91 0.502 13.6 0.332 -- -0.41 -- 0.434 -0.227 -- 19.08 1702 -- --
33.25 0.27 13.7 0.132 1.23 -- -0.492 -- -0.297 21.2 -- -- -- --
34.1 0.273 13.7 0.149 1.24 -- -- -- -0.296 21.2 -- -- -- --
115.6 0.503 13.6 0.288 -- -0.468 -- -- -0.238 -- 19.08 1702 -- --
34.04 0.272 13.7 -- 1.23 -0.212 -- -- -0.284 21.1 16.7 4711 -- --
122.55 0.517 13.6 0.153 -- -- -- -- -0.303 -- -- -- -- --
34.68 0.275 13.7 -- 1.24 -- -- -- -0.313 21.2 -- -- -- --
84.76 0.429 13.7 -- -- 0.878 -- -- -0.545 -- 26 677 -- --
123.17 0.518 13.6 -- -- -- -- -- -0.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.32 temperature 20.0 90 > th dose independent rect. 5 4
4 26.49 wind 9.0 90 < th dose independent rect. 7 23
5 26.51 radiation 20.0 90 < th dose independent rect. 5 4
6 26.59 wind 7.0 90 < th dose independent rect. 9 20
9 26.69 temperature 15.0 90 > th dose dependent rect. 5 3
11 26.76 temperature 30.0 90 < th dose independent rect. 5 4
12 26.76 wind 7.0 270 < th dose independent rect. 7 21
13 26.77 radiation 40.0 90 < th dose dependent rect. 5 4
14 26.79 humidity 70.0 90 > th dose independent rect. 5 4
15 26.81 wind 9.0 270 < th dose independent rect. 7 10
16 26.84 atmosphere 995.0 90 > th dose dependent rect. 5 3
19 26.87 wind 5.0 90 < th dose independent rect. 5 4
20 26.89 wind 5.0 90 < th dose independent rect. 6 1
21 26.89 radiation 1.0 90 > th dose independent rect. 6 1
23 26.90 radiation 20.0 90 < th dose independent rect. 6 1
28 26.91 temperature 10.0 90 > th dose independent rect. 6 1
30 26.91 temperature 30.0 90 < th dose independent rect. 6 1
31 26.91 humidity 50.0 90 > th dose independent rect. 6 1
33 26.91 atmosphere 995.0 90 > th dose independent rect. 6 1
34 26.91 atmosphere 1015.0 90 < th dose independent rect. 6 1
37 26.91 precipitation 0.1 90 < th dose independent rect. 6 1
38 26.91 temperature 10.0 90 > th dose independent rect. 7 23
39 26.91 atmosphere 995.0 90 > th dose dependent rect. 6 1
40 26.91 precipitation 0.1 90 < th dose dependent rect. 6 1
41 26.91 wind 9.0 90 < th dose dependent rect. 5 4
42 26.91 humidity 50.0 90 > th dose dependent rect. 5 4
48 26.94 wind 1.0 90 > th dose independent rect. 6 1
50 26.95 temperature 10.0 90 > th dose independent rect. 5 4
52 26.95 humidity 50.0 90 > th dose independent rect. 5 4
53 26.95 atmosphere 995.0 90 > th dose independent rect. 5 4
54 26.95 atmosphere 1015.0 90 < th dose independent rect. 5 4
55 26.95 temperature 10.0 90 > th dose independent rect. 9 20
56 26.95 wind 9.0 90 < th dose dependent rect. 6 1
57 26.96 precipitation 0.1 90 < th dose independent rect. 5 4
59 26.96 precipitation 0.1 90 < th dose dependent rect. 5 4
65 26.98 humidity 50.0 90 > th dose dependent rect. 6 1
68 27.00 precipitation 0.1 270 < th dose independent rect. 7 21
70 27.00 precipitation 0.1 270 < th dose dependent rect. 7 21
84 27.03 atmosphere 1000.0 90 > th dose independent rect. 5 17
85 27.03 radiation 40.0 90 < th dose dependent rect. 6 1
86 27.04 wind 5.0 90 < th dose independent rect. 22 7
89 27.05 wind 1.0 270 > th dose independent rect. 4 3
94 27.06 precipitation 0.1 90 < th dose independent rect. 9 20
96 27.06 precipitation 0.1 90 < th dose dependent rect. 9 20
97 27.07 radiation 40.0 90 < th dose independent rect. 5 18
99 27.08 atmosphere 1000.0 10 > th dose independent rect. 7 23
100 27.10 wind 7.0 10 < th dose independent rect. 9 21
127 27.16 wind 7.0 10 < th dose dependent rect. 6 3
129 27.16 radiation 40.0 10 < th dose dependent rect. 6 3
169 27.24 radiation 1.0 90 < th dose dependent sin 10 NA
171 27.24 radiation 1.0 90 > th dose dependent rect. 5 2
176 27.25 wind 3.0 10 < th dose independent rect. 6 3
178 27.26 radiation 1.0 90 > th dose independent sin 10 NA
179 27.26 radiation 20.0 270 < th dose independent rect. 17 14
181 27.26 atmosphere 1000.0 10 > th dose dependent rect. 6 2
205 27.30 temperature 10.0 270 > th dose independent rect. 7 10
206 27.30 atmosphere 1015.0 270 < th dose independent rect. 7 10
207 27.30 temperature 10.0 270 > th dose independent rect. 17 14
211 27.30 wind 9.0 90 < th dose dependent rect. 9 20
212 27.31 radiation 1.0 90 < th dose independent sin 10 NA
224 27.31 atmosphere 995.0 270 > th dose independent rect. 17 14
226 27.31 humidity 80.0 10 > th dose dependent rect. 6 1
229 27.32 precipitation 0.1 270 < th dose independent rect. 7 10
231 27.32 temperature 15.0 90 > th dose independent rect. 5 18
234 27.32 precipitation 0.1 270 < th dose dependent rect. 7 10
235 27.33 atmosphere 1015.0 90 < th dose independent rect. 5 18
240 27.34 precipitation 0.1 90 < th dose independent rect. 22 7
243 27.34 wind 9.0 90 < th dose dependent rect. 22 7
244 27.34 precipitation 0.1 90 < th dose dependent rect. 22 7
253 27.37 atmosphere 1000.0 10 > th dose independent rect. 6 17
255 27.38 humidity 70.0 90 > th dose independent rect. 5 6
256 27.38 temperature 10.0 90 > th dose independent rect. 22 7
257 27.38 temperature 30.0 90 < th dose independent rect. 22 7
258 27.38 humidity 50.0 90 > th dose independent rect. 22 7
261 27.38 atmosphere 995.0 90 > th dose independent rect. 22 7
262 27.38 radiation 20.0 90 < th dose independent rect. 22 7
269 27.38 radiation 40.0 90 < th dose dependent rect. 22 7
270 27.39 radiation 1.0 90 < th dose independent rect. 22 7
273 27.39 radiation 10.0 90 < th dose dependent rect. 22 7
297 27.45 humidity 90.0 90 < th dose independent rect. 6 1
298 27.45 radiation 30.0 10 < th dose independent rect. 6 3
301 27.46 wind 9.0 270 < th dose independent rect. 17 14
307 27.47 radiation 1.0 90 < th dose dependent rect. 22 9
308 27.47 atmosphere 995.0 90 > th dose dependent rect. 5 17
350 27.50 precipitation 0.1 90 < th dose independent rect. 7 23
351 27.50 precipitation 0.1 90 < th dose dependent rect. 7 23
355 27.51 humidity 50.0 10 > th dose dependent rect. 6 3
357 27.51 radiation 40.0 90 < th dose dependent rect. 5 18
363 27.53 humidity 50.0 14400 > th dose independent rect. 7 2
365 27.53 humidity 60.0 90 > th dose dependent rect. 5 6
366 27.53 temperature 10.0 270 > th dose dependent rect. 22 15
368 27.54 precipitation 0.1 90 < th dose independent rect. 5 17
372 27.54 precipitation 0.1 90 < th dose dependent rect. 5 17
378 27.55 radiation 1.0 90 < th dose independent rect. 22 9
381 27.55 atmosphere 995.0 90 > th dose dependent rect. 23 6
382 27.55 radiation 30.0 270 < th dose dependent rect. 3 6
385 27.56 temperature 20.0 10 > th dose independent rect. 6 1
386 27.56 humidity 70.0 10 > th dose independent rect. 6 3
389 27.56 humidity 50.0 270 > th dose independent rect. 17 14
395 27.57 temperature 10.0 10 > th dose independent rect. 6 3
397 27.57 temperature 30.0 10 < th dose independent rect. 6 3
398 27.57 humidity 50.0 10 > th dose independent rect. 6 3
400 27.57 atmosphere 995.0 10 > th dose independent rect. 6 3
401 27.57 atmosphere 1015.0 10 < th dose independent rect. 6 3
402 27.57 precipitation 0.1 10 < th dose independent rect. 6 3
404 27.57 temperature 10.0 10 > th dose independent rect. 9 21
408 27.57 precipitation 0.1 10 < th dose dependent rect. 6 3
425 27.58 radiation 40.0 270 < th dose dependent rect. 17 14
429 27.59 temperature 30.0 10 < th dose dependent rect. 6 1
434 27.61 temperature 30.0 90 < th dose independent rect. 5 17
446 27.63 radiation 1.0 10 > th dose independent rect. 6 1
450 27.63 atmosphere 995.0 90 > th dose independent rect. 9 20
451 27.63 precipitation 0.1 10 < th dose independent rect. 7 23
456 27.63 precipitation 0.1 10 < th dose dependent rect. 7 23
472 27.65 radiation 10.0 10 < th dose dependent rect. 23 7
475 27.66 humidity 90.0 10 < th dose independent rect. 6 3
484 27.67 radiation 20.0 90 < th dose independent rect. 5 18
490 27.68 humidity 80.0 10 > th dose independent rect. 6 1
539 27.71 precipitation 0.1 10 < th dose independent rect. 6 1
541 27.71 wind 1.0 10 > th dose independent rect. 6 3
550 27.71 precipitation 0.1 10 < th dose dependent rect. 6 1
568 27.73 radiation 20.0 10 < th dose independent rect. 6 17
575 27.73 humidity 50.0 90 > th dose dependent rect. 22 7
577 27.73 atmosphere 995.0 10 > th dose dependent rect. 6 17
599 27.75 humidity 50.0 10 > th dose independent rect. 7 23
619 27.76 radiation 40.0 10 < th dose dependent rect. 6 17
620 27.76 temperature 10.0 90 > th dose dependent rect. 9 20
624 27.77 precipitation 0.1 10 < th dose independent rect. 9 21
630 27.77 precipitation 0.1 10 < th dose dependent rect. 9 21
654 27.81 temperature 15.0 4320 > th dose independent rect. 7 3
655 27.81 radiation 1.0 10 > th dose independent rect. 6 3
658 27.81 wind 9.0 90 < th dose independent rect. 5 17
733 27.86 atmosphere 995.0 1440 > th dose independent rect. 7 3
734 27.86 atmosphere 1015.0 1440 < th dose independent rect. 7 3
736 27.86 temperature 10.0 1440 > th dose independent rect. 10 21
758 27.88 wind 1.0 270 > th dose independent rect. 7 10
783 27.91 wind 9.0 1440 < th dose independent rect. 7 1
786 27.91 temperature 10.0 1440 > th dose independent rect. 7 1
790 27.91 temperature 30.0 1440 < th dose independent rect. 7 1
794 27.91 humidity 50.0 1440 > th dose independent rect. 7 1
800 27.91 atmosphere 995.0 1440 > th dose independent rect. 7 1
801 27.91 atmosphere 1015.0 1440 < th dose independent rect. 7 1
803 27.91 temperature 10.0 1440 > th dose independent rect. 8 23
824 27.94 wind 1.0 90 > th dose independent rect. 9 20
828 27.94 temperature 10.0 270 > th dose dependent rect. 7 8
868 27.99 temperature 30.0 270 < th dose dependent rect. 3 11
893 28.01 temperature 30.0 90 < th dose dependent rect. 5 10
967 28.07 atmosphere 1015.0 10 < th dose dependent rect. 6 1
985 28.08 temperature 10.0 10 > th dose dependent rect. 9 21
996 28.09 radiation 40.0 270 < th dose dependent rect. 3 18