BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0534000 Os02g0534000|Os02g0534000
         (189 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0534000  Conserved hypothetical protein                      234   3e-62
Os04g0413100  Conserved hypothetical protein                       83   1e-16

>Os02g0534000 Conserved hypothetical protein
          Length = 189

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 127/189 (67%)

Query: 1   MAVTTTCRGGHHAAVMPRPPPPLFGQAGQDQRRRYXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MAVTTTCRGGHHAAVMPRPPPPLFGQAGQDQRRRY                         
Sbjct: 1   MAVTTTCRGGHHAAVMPRPPPPLFGQAGQDQRRRYLGLCTEGLGSESSESSGGDVDLGTG 60

Query: 61  XXXXXXXXXXXRALPCKRQHRPIDDXXXXXXKTVVXXXXXXXXXXWTRAAFPPPISVIGA 120
                      RALPCKRQHRPIDD      KTVV          WTRAAFPPPISVIGA
Sbjct: 61  GGDDTGNDGVGRALPCKRQHRPIDDEEEEEEKTVVPAALAPPLPAWTRAAFPPPISVIGA 120

Query: 121 GGKPWLYLRAHRGDGRLVLREVRIPSRELLHGRREDGRFKLHFAHPDEXXXXXXXXXXAD 180
           GGKPWLYLRAHRGDGRLVLREVRIPSRELLHGRREDGRFKLHFAHPDE          AD
Sbjct: 121 GGKPWLYLRAHRGDGRLVLREVRIPSRELLHGRREDGRFKLHFAHPDEQLQQQQLLLLAD 180

Query: 181 DQDPAEKNE 189
           DQDPAEKNE
Sbjct: 181 DQDPAEKNE 189



>Os04g0413100 Conserved hypothetical protein
          Length = 182

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 110 AFPPPISVIGAGGKPWLYLRAHRGDGRLVLREVRIPSRELLHGRREDGRFKLHFAHPD 167
           AFPPPISVIG GG+PWL LRAHR  GRLVLRE+R+PS+ELL   +EDGRFKL   HP+
Sbjct: 100 AFPPPISVIGKGGRPWLSLRAHREAGRLVLREMRLPSQELLQPCKEDGRFKL-LIHPE 156



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,311,580
Number of extensions: 236406
Number of successful extensions: 1067
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1066
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)