BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0513800 Os02g0513800|AK120082
(605 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0513800 Ovarian tumour, otubain domain containing protein 1161 0.0
Os02g0517600 Conserved hypothetical protein 243 3e-64
Os02g0521500 124 2e-28
Os07g0690800 103 4e-22
Os12g0624500 74 3e-13
>Os02g0513800 Ovarian tumour, otubain domain containing protein
Length = 605
Score = 1161 bits (3004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/605 (92%), Positives = 559/605 (92%)
Query: 1 MGEAANHYFRNIDNSFQQPEVGLRLKYLSHHYSEFRPVHRDEECFYRSFIFSYLEQVVDS 60
MGEAANHYFRNIDNSFQQPEVGLRLKYLSHHYSEFRPVHRDEECFYRSFIFSYLEQVVDS
Sbjct: 1 MGEAANHYFRNIDNSFQQPEVGLRLKYLSHHYSEFRPVHRDEECFYRSFIFSYLEQVVDS 60
Query: 61 IGTREEDRLLAAVRALATKAENLQWASEFSQKHKAFERLIEKIKGWKRMQEHPISIIRGK 120
IGTREEDRLLAAVRALATKAENLQWASEFSQKHKAFERLIEKIKGWKRMQEHPISIIRGK
Sbjct: 61 IGTREEDRLLAAVRALATKAENLQWASEFSQKHKAFERLIEKIKGWKRMQEHPISIIRGK 120
Query: 121 ILEFFSSYDTTDDIFAFLRLVAATWMCTRIWNYEWCATNCGENQNLEDWCSKHVIAPRVY 180
ILEFFSSYDTTDDIFAFLRLVAATWMCTRIWNYEWCATNCGENQNLEDWCSKHVIAPRVY
Sbjct: 121 ILEFFSSYDTTDDIFAFLRLVAATWMCTRIWNYEWCATNCGENQNLEDWCSKHVIAPRVY 180
Query: 181 ATSAAVKACAEALRVTVQVENVHDGTCESTHYIVRGAPCVTLLRIESHYDXXXXXXXXXX 240
ATSAAVKACAEALRVTVQVENVHDGTCESTHYIVRGAPCVTLLRIESHYD
Sbjct: 181 ATSAAVKACAEALRVTVQVENVHDGTCESTHYIVRGAPCVTLLRIESHYDIIYPLPPSSI 240
Query: 241 XXXXXHEEKLLPIPSSILAYDRRKIFDRKQKHLDRSNQNTRASTSKSPPHEDQKRSGRKR 300
HEEKLLPIPSSILAYDRRKIFDRKQKHLDRSNQNTRASTSKSPPHEDQKRSGRKR
Sbjct: 241 NSSNPHEEKLLPIPSSILAYDRRKIFDRKQKHLDRSNQNTRASTSKSPPHEDQKRSGRKR 300
Query: 301 KRPGCSNQNPRASMSKSSLRKDHKSSALAXXXXXXXXXXXXXXXIIPPGCGRTRKYEIXX 360
KRPGCSNQNPRASMSKSSLRKDHKSSALA IIPPGCGRTRKYEI
Sbjct: 301 KRPGCSNQNPRASMSKSSLRKDHKSSALATLVDTRRRRTRLTDTIIPPGCGRTRKYEITR 360
Query: 361 XXXXXXXXXXXXXXYKLHSQPNSLAGRFSLRNFLISDEMTIEMDEFQADDLDPYTKANAE 420
YKLHSQPNSLAGRFSLRNFLISDEMTIEMDEFQADDLDPYTKANAE
Sbjct: 361 MSTRLVLRRSVRSLYKLHSQPNSLAGRFSLRNFLISDEMTIEMDEFQADDLDPYTKANAE 420
Query: 421 VDFYQYVKTIEELFESLPVPEDIHRWLSMIMRDPTAYQYLICYHYCLMEEHQMMHVFTSL 480
VDFYQYVKTIEELFESLPVPEDIHRWLSMIMRDPTAYQYLICYHYCLMEEHQMMHVFTSL
Sbjct: 421 VDFYQYVKTIEELFESLPVPEDIHRWLSMIMRDPTAYQYLICYHYCLMEEHQMMHVFTSL 480
Query: 481 YNKLLVLPTTDPAGYNFVLERLKIFSGWSPMDLHNVYFIETFYWKDPITGVPIIYGDDVL 540
YNKLLVLPTTDPAGYNFVLERLKIFSGWSPMDLHNVYFIETFYWKDPITGVPIIYGDDVL
Sbjct: 481 YNKLLVLPTTDPAGYNFVLERLKIFSGWSPMDLHNVYFIETFYWKDPITGVPIIYGDDVL 540
Query: 541 SLLRLVRNTYQHFMSKVVEGRKLLFSEKDFGNMVNEQFSGLLDEFFEAMFIATYYADLQL 600
SLLRLVRNTYQHFMSKVVEGRKLLFSEKDFGNMVNEQFSGLLDEFFEAMFIATYYADLQL
Sbjct: 541 SLLRLVRNTYQHFMSKVVEGRKLLFSEKDFGNMVNEQFSGLLDEFFEAMFIATYYADLQL 600
Query: 601 EHTMV 605
EHTMV
Sbjct: 601 EHTMV 605
>Os02g0517600 Conserved hypothetical protein
Length = 496
Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/244 (54%), Positives = 153/244 (62%), Gaps = 23/244 (9%)
Query: 7 HYFRNIDNSFQQPEVGLRLKYLSHHYSEFRPVHRDEECFYRSFIFSYLEQVVDSIGTREE 66
HYF NI N+ Q V L L +L YSE RPV RD E FYRSF+FSYLEQV D + TREE
Sbjct: 152 HYFGNIHNALQHGYVPLHLAHLDTRYSELRPVRRDGEGFYRSFMFSYLEQVADRVDTREE 211
Query: 67 DRLLAAVRALATKAENLQWASEFSQKHKAFERLIEKIKGWKRMQEHPISIIRGK-ILEFF 125
DRLL AVR LAT+AE+LQWASEFS++ +AFE LIEKIK K M E P S IRG+ +LE F
Sbjct: 212 DRLLDAVRKLATRAEHLQWASEFSRRCEAFETLIEKIKKLKCMSEQPTSAIRGELLLELF 271
Query: 126 SSYDTTDDIFAFLRLVAATWMCTRIWNYEWCATNCGENQNLEDWCSKHVIAPRVYATSAA 185
SSYDTTDDIFAFLRL AA W+CT Y T GE +LEDWCS VI PRV+A
Sbjct: 272 SSYDTTDDIFAFLRLAAAIWICTHKGLYGQRVTGLGEGVSLEDWCSTQVIPPRVHADHVT 331
Query: 186 VKACAEALRVTVQVENVHDG----------------------TCESTHYIVRGAPCVTLL 223
+ A + AL V V+VE+ DG E + + RG P VTL+
Sbjct: 332 MSALSRALGVAVRVEDTLDGRKKDLMAAELQSITRASNPRFRGIEDMYCVARGTPRVTLV 391
Query: 224 RIES 227
RI S
Sbjct: 392 RILS 395
>Os02g0521500
Length = 491
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 105/178 (58%), Gaps = 13/178 (7%)
Query: 54 LEQVVDSIGTREEDRLLAA----VRALATKAENLQWASEFSQKHKAFERLIEKIKGWKRM 109
LEQV+D T EE RLLAA V+ +A + + +WA+ FS H+ F++LIE I GWK
Sbjct: 313 LEQVLDREDTDEEQRLLAALEIEVKPMAMQIDYPEWATAFSWGHEVFKKLIENIIGWK-- 370
Query: 110 QEHPISIIRGK--ILEFFSSYDTTDDIFAFLRLVAATWMCTRIWNYEWCATNCGENQNLE 167
+P S K +L FFSS ++ IF FLR +AATW+C+ YE + G++ LE
Sbjct: 371 --NPASTYSRKQELLGFFSSKRMSNGIFVFLRSLAATWICSHKDEYEQYVDDLGDDYPLE 428
Query: 168 DWCSKHVIAPRVYATSAAVKACAEALRVTVQVENVHDGTCESTHYIVRG--APCVTLL 223
WC+ +++ PR+Y ++A A A RV +QVEN+H+G + Y G P VTLL
Sbjct: 429 FWCATNLLPPRLYTDHVPMRALAAAFRVPLQVENLHNGPAQDI-YTADGVDVPRVTLL 485
>Os07g0690800
Length = 709
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 12/216 (5%)
Query: 377 LHSQPNSLAGRFSLRNFLISDEMTIEMDEFQADDLDPYTK-ANAEVDFYQYVKTIE-ELF 434
LH + SL G+F NF D+ + D+L ++ +D+ +VK ++ E+F
Sbjct: 401 LHKENISLCGKFGAENFFYDDDNNARIGNLMEDNLKYGADLSDKNLDYESFVKMVKKEVF 460
Query: 435 ESLPVPEDIHRWLSMIMRDPTAYQYLICYHYCLMEEHQMMHVFTSLYNKLLVLPTTDPAG 494
+P + WL ++ ++YL+C+H LME Q F SL++ L + T+DPA
Sbjct: 461 VRTSIPNSLSEWLCLMSSGVKGFEYLLCHHDGLMEPRQNASSFMSLHDIFLEIETSDPAA 520
Query: 495 YNFVLERLKIFSGWSPMDLHNVYFIETFYWKDPITGVPIIYGDDVLSLLRLVRNTYQHFM 554
Y VL L+ ++ W +N + T + D G I Y DDV LLR +RN +H
Sbjct: 521 YGSVLSDLRQYNYWKSKMPNNSFLKSTKEYMDK-DGKQIEYKDDVKDLLRFLRNCRRHAA 579
Query: 555 SKVVEGRKLLFSEKDFGNMVNEQFSGLLDEFFEAMF 590
F E +F ++V+ + L+ +F +AMF
Sbjct: 580 Q---------FKEDEFPSIVDHFYPKLMCDFQKAMF 606
>Os12g0624500
Length = 707
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 383 SLAGRFSLRNFLISDEMTIEMDEFQADDLDPYTKANAEVDFYQYVK-TIEELFESLP-VP 440
+ G F+ NFL+ + ++ + E D ++VK T EE+F S+ +P
Sbjct: 477 TFGGHFTSENFLMDTCGNMRFGNLSKGVINKLEDGDIEKDTDRFVKMTREEVFVSVTTLP 536
Query: 441 EDIHRWLSMIMRDPTAYQYLICYHYCLMEEHQMMHVFTSLYNKLLVLPTTDPAGYNFVLE 500
DI +W+ +I R Y L + L + ++ F SL+N + TTD Y +
Sbjct: 537 LDIIQWIELIDRCARGYDSLAEDYITLKDGYRSAAHFMSLHNMFEKMETTDNPTYEKIKT 596
Query: 501 RLKIFSGWSP---MDLHNVYFIETFYWKDPITGVPIIYGDDVLSLLRLVRNTYQH 552
+L ++ W N + ET + DP TG Y DD+ LL+L+RN QH
Sbjct: 597 KLSKYTKWKKGVEAPDGNTHLKETLDFIDPATGRKAYYSDDICGLLKLLRNIRQH 651
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,875,373
Number of extensions: 730169
Number of successful extensions: 1894
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1883
Number of HSP's successfully gapped: 6
Length of query: 605
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 498
Effective length of database: 11,448,903
Effective search space: 5701553694
Effective search space used: 5701553694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)