BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0510300 Os02g0510300|AK067961
         (320 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0510300  Conserved hypothetical protein                      297   6e-81

>Os02g0510300 Conserved hypothetical protein
          Length = 320

 Score =  297 bits (761), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 169/277 (61%), Positives = 169/277 (61%)

Query: 44  WDLPVRDLMDASXXXXXXXXXXXXXFDYYTNPXXXXXXXXXXXHKRKVAEXXXXXXXXXX 103
           WDLPVRDLMDAS             FDYYTNP           HKRKVAE          
Sbjct: 44  WDLPVRDLMDASATTTAAAPRPPPRFDYYTNPAAAFASSSAASHKRKVAEPPPPGSGNYG 103

Query: 104 XXXXXXXXXXXXXXXXXTPSRLSHDSPGGSPWRSPMQFQAPMXXXXXXXXXXXXXXXXXX 163
                            TPSRLSHDSPGGSPWRSPMQFQAPM                  
Sbjct: 104 SGYPPPHQHHMAPPPIHTPSRLSHDSPGGSPWRSPMQFQAPMSGYRGPPPGAPPPWSPHS 163

Query: 164 XXXXXXXXXXXXXSQGLYPHPPSYGPRNYNPGQGGGRMNYGPRGRPDSXXXXXXXXXXXX 223
                        SQGLYPHPPSYGPRNYNPGQGGGRMNYGPRGRPDS            
Sbjct: 164 GVPPPWNPHSAPPSQGLYPHPPSYGPRNYNPGQGGGRMNYGPRGRPDSPYGRGRGQNNYN 223

Query: 224 XXXXXXXXXXXXXXTQNYSGWQDGRVRYHKSMTDDPWRDLQPIVGNIMIPRDGSKSWLPE 283
                         TQNYSGWQDGRVRYHKSMTDDPWRDLQPIVGNIMIPRDGSKSWLPE
Sbjct: 224 NPGSRGRGGRDGSGTQNYSGWQDGRVRYHKSMTDDPWRDLQPIVGNIMIPRDGSKSWLPE 283

Query: 284 SLRAKKDTSDRGQVKPPSGLSLAEYLDLSFNEASNDT 320
           SLRAKKDTSDRGQVKPPSGLSLAEYLDLSFNEASNDT
Sbjct: 284 SLRAKKDTSDRGQVKPPSGLSLAEYLDLSFNEASNDT 320



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,607,758
Number of extensions: 228106
Number of successful extensions: 466
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)