BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0510200 Os02g0510200|AB049822
         (644 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0510200  Similar to Acetohydroxyacid synthase               1167   0.0  
Os04g0389100                                                      114   3e-25
Os02g0267100                                                       88   2e-17

>Os02g0510200 Similar to Acetohydroxyacid synthase
          Length = 644

 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/626 (91%), Positives = 572/626 (91%)

Query: 19  KTGRKNHQRHHVLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRPWGPAEPRKGADILV 78
           KTGRKNHQRHHVLP                             LRPWGPAEPRKGADILV
Sbjct: 19  KTGRKNHQRHHVLPARGRVGAAAVRCSAVSPVTPPSPAPPATPLRPWGPAEPRKGADILV 78

Query: 79  EALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFAASGYARASGRVGVC 138
           EALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFAASGYARASGRVGVC
Sbjct: 79  EALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFAASGYARASGRVGVC 138

Query: 139 VATSGPGATNXXXXXXXXXXXXXPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYL 198
           VATSGPGATN             PMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYL
Sbjct: 139 VATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYL 198

Query: 199 VLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDTSMNLPGYIARLPKPP 258
           VLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDTSMNLPGYIARLPKPP
Sbjct: 199 VLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDTSMNLPGYIARLPKPP 258

Query: 259 ATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDDPL 318
           ATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDDPL
Sbjct: 259 ATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDDPL 318

Query: 319 SLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKN 378
           SLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKN
Sbjct: 319 SLRMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKN 378

Query: 379 KQPHVSICADVKXXXXXXXXXXXXSTTKTSSDFSAWHNELDQQKREFPLGYKTFGEEIPP 438
           KQPHVSICADVK            STTKTSSDFSAWHNELDQQKREFPLGYKTFGEEIPP
Sbjct: 379 KQPHVSICADVKLALQGLNALLQQSTTKTSSDFSAWHNELDQQKREFPLGYKTFGEEIPP 438

Query: 439 QYAIQVLDELTKGEAIIATGVGQHQMWAAQYYTYKRPRQWLSSAGLGAMGFGLPAAAGAS 498
           QYAIQVLDELTKGEAIIATGVGQHQMWAAQYYTYKRPRQWLSSAGLGAMGFGLPAAAGAS
Sbjct: 439 QYAIQVLDELTKGEAIIATGVGQHQMWAAQYYTYKRPRQWLSSAGLGAMGFGLPAAAGAS 498

Query: 499 VANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLGMVVQWEDRFYKANRA 558
           VANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLGMVVQWEDRFYKANRA
Sbjct: 499 VANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQHLGMVVQWEDRFYKANRA 558

Query: 559 HTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQ 618
           HTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQ
Sbjct: 559 HTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKSEVRAAIKKMLETPGPYLLDIIVPHQ 618

Query: 619 EHVLPMIPSGGAFKDMILDGDGRTVY 644
           EHVLPMIPSGGAFKDMILDGDGRTVY
Sbjct: 619 EHVLPMIPSGGAFKDMILDGDGRTVY 644



>Os04g0389100 
          Length = 676

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/63 (85%), Positives = 54/63 (85%)

Query: 63  RPWGPAEPRKGADILVEALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEA 122
           R WGP E RKGADILVEAL RCGV DVF YPGGASMEIHQALTRSP I NHL RHEQGEA
Sbjct: 81  RRWGPTERRKGADILVEALGRCGVRDVFGYPGGASMEIHQALTRSPAIRNHLLRHEQGEA 140

Query: 123 FAA 125
           FAA
Sbjct: 141 FAA 143



>Os02g0267100 
          Length = 78

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/54 (79%), Positives = 46/54 (85%), Gaps = 7/54 (12%)

Query: 487 MGFGLPAAAGASVANPGVTVVDIDGDGSFLMNIQELALIRIENLPVKVMVLNNQ 540
           MGFGLPAAAGA+V       VDIDGDGSFLMNIQELA+I +ENLPVKVMVLNNQ
Sbjct: 1   MGFGLPAAAGAAV-------VDIDGDGSFLMNIQELAMIHVENLPVKVMVLNNQ 47



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,298,148
Number of extensions: 911188
Number of successful extensions: 2137
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2135
Number of HSP's successfully gapped: 3
Length of query: 644
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 537
Effective length of database: 11,448,903
Effective search space: 6148060911
Effective search space used: 6148060911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)