BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0488600 Os02g0488600|Os02g0488600
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0488600                                                      258   1e-69
Os08g0330900  Cyclin-like F-box domain containing protein         223   4e-59

>Os02g0488600 
          Length = 131

 Score =  258 bits (658), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/131 (94%), Positives = 124/131 (94%)

Query: 1   MWSCLRHLHGVRVLKLQLDFYAEYIAVXXXXXXXGVLATFPNLEYLELDAHCKDDHDMAT 60
           MWSCLRHLHGVRVLKLQLDFYAEYIAV       GVLATFPNLEYLELDAHCKDDHDMAT
Sbjct: 1   MWSCLRHLHGVRVLKLQLDFYAEYIAVDADDADDGVLATFPNLEYLELDAHCKDDHDMAT 60

Query: 61  ELTVASVLRWCPAIRELRLRLSVADAEGRVNVIYNSKRHMIHHARMMRNSFGQDVQTKIY 120
           ELTVASVLRWCPAIRELRLRLSVADAEGRVNVIYNSKRHMIHHARMMRNSFGQDVQTKIY
Sbjct: 61  ELTVASVLRWCPAIRELRLRLSVADAEGRVNVIYNSKRHMIHHARMMRNSFGQDVQTKIY 120

Query: 121 VDVTNITTSSP 131
           VDVTNITTSSP
Sbjct: 121 VDVTNITTSSP 131



>Os08g0330900 Cyclin-like F-box domain containing protein
          Length = 733

 Score =  223 bits (567), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 116/131 (88%), Gaps = 3/131 (2%)

Query: 1   MWSCLRHLHGVRVLKLQLDFYAEYIAVXXXXXXXG--VLATFPNLEYLELDAHCKDDHDM 58
           +WSCLRHLHGVRVLKLQLDFYAEYI +       G  V ATFPNLEYLELDAHCKDDHDM
Sbjct: 317 LWSCLRHLHGVRVLKLQLDFYAEYITMEADACDGGGVVPATFPNLEYLELDAHCKDDHDM 376

Query: 59  ATELTVASVLRWCPAIRELRLRLSVADAEGRVNVIYNSKRHMIHHARMMRNSFGQDVQTK 118
           ATELTVASVLRWCPAIR+LRLRLSVADAEGRVNV YNSKRHMIH AR+MRNSF QDVQTK
Sbjct: 377 ATELTVASVLRWCPAIRDLRLRLSVADAEGRVNV-YNSKRHMIHQARLMRNSFEQDVQTK 435

Query: 119 IYVDVTNITTS 129
           I VDVTNITTS
Sbjct: 436 IDVDVTNITTS 446



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,772,526
Number of extensions: 119880
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)