Os02g0488600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0488600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.42 | 0.617 | 3.12 | -0.0636 | 0.178 | 5.65 | -0.141 | 15.4 | 0.0751 | 10.4 | 9.8 | 251 | -- | -- |
| 168.78 | 0.605 | 3.07 | -0.246 | 0.141 | 2.99 | 0.132 | -- | 0.0736 | 9.2 | 11.27 | 336 | -- | -- |
| 168.27 | 0.604 | 3.1 | -0.153 | 0.148 | 6.28 | -- | 15.2 | 0.0561 | 10.1 | 10.69 | 267 | -- | -- |
| 168.73 | 0.605 | 3.07 | -0.244 | 0.139 | 2.96 | -- | -- | 0.0733 | 10.2 | 11.23 | 284 | -- | -- |
| 169.14 | 0.606 | 3.1 | -0.0724 | -- | 7.18 | -- | 19.7 | 0.0714 | -- | 10.7 | 306 | -- | -- |
| 185.95 | 0.639 | 3.08 | -0.293 | 0.154 | -- | -0.0835 | -- | 0.0526 | 11.7 | -- | -- | -- | -- |
| 185.97 | 0.639 | 3.08 | -0.297 | 0.155 | -- | -- | -- | 0.052 | 11.4 | -- | -- | -- | -- |
| 169.91 | 0.607 | 3.08 | -0.246 | -- | 2.98 | -- | -- | 0.0733 | -- | 11.21 | 307 | -- | -- |
| 170.31 | 0.608 | 3.07 | -- | 0.14 | 3.02 | -- | -- | 0.101 | 10.3 | 11.05 | 280 | -- | -- |
| 187.47 | 0.64 | 3.08 | -0.301 | -- | -- | -- | -- | 0.0504 | -- | -- | -- | -- | -- |
| 188.29 | 0.642 | 3.07 | -- | 0.158 | -- | -- | -- | 0.085 | 11.5 | -- | -- | -- | -- |
| 171.5 | 0.61 | 3.07 | -- | -- | 3.04 | -- | -- | 0.101 | -- | 11.02 | 303 | -- | -- |
| 189.86 | 0.643 | 3.07 | -- | -- | -- | -- | -- | 0.0838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.07 | wind | 7 | 90 | > th | dose dependent | rect. | 12 | 4 |
| 8 | 167.94 | wind | 9 | 90 | > th | dose independent | rect. | 12 | 4 |
| 44 | 170.27 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 47 | 170.29 | wind | 9 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 51 | 170.42 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 54 | 170.51 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 82 | 171.59 | wind | 9 | 270 | > th | dose independent | rect. | 19 | 21 |
| 83 | 171.61 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 19 |
| 88 | 171.74 | wind | 9 | 270 | > th | dose independent | rect. | 1 | 15 |
| 102 | 171.93 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 104 | 171.93 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 111 | 172.11 | wind | 9 | 270 | > th | dose dependent | sin | 3 | NA |
| 169 | 172.26 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 271 | 172.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 283 | 172.86 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 285 | 172.93 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 296 | 173.11 | wind | 9 | 30 | > th | dose independent | rect. | 13 | 22 |
| 314 | 173.21 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 322 | 173.21 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 332 | 173.22 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 357 | 173.33 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 364 | 173.34 | radiation | 40 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 366 | 173.36 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 386 | 173.38 | wind | 9 | 30 | > th | dose independent | rect. | 13 | 7 |
| 398 | 173.38 | humidity | 60 | 90 | < th | dose dependent | rect. | 16 | 18 |
| 407 | 173.39 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 4 |
| 408 | 173.40 | humidity | 60 | 90 | < th | dose independent | rect. | 16 | 18 |
| 410 | 173.42 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 413 | 173.43 | humidity | 60 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 439 | 173.44 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 454 | 173.45 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 478 | 173.49 | wind | 9 | 270 | > th | dose independent | sin | 2 | NA |
| 479 | 173.50 | wind | 9 | 270 | < th | dose independent | sin | 2 | NA |
| 482 | 173.50 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 483 | 173.50 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 489 | 173.53 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 23 |
| 498 | 173.58 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 561 | 173.69 | wind | 1 | 10 | < th | dose independent | sin | 21 | NA |
| 566 | 173.71 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 15 |
| 616 | 173.78 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 12 |
| 637 | 173.84 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 728 | 173.95 | radiation | 40 | 30 | > th | dose dependent | sin | 12 | NA |
| 786 | 174.17 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 11 |
| 790 | 174.18 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 8 |
| 805 | 174.20 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 806 | 174.21 | wind | 1 | 10 | > th | dose independent | sin | 21 | NA |
| 859 | 174.38 | radiation | 40 | 10 | > th | dose independent | rect. | 14 | 20 |
| 865 | 174.40 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 933 | 174.53 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 936 | 174.55 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 937 | 174.55 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 952 | 174.55 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 968 | 174.56 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 985 | 174.60 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 14 |