BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0480900 Os02g0480900|AK073830
         (591 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0480900  Like-Sm ribonucleoprotein-related, core domain...  1008   0.0  
AK109980                                                          124   1e-28

>Os02g0480900 Like-Sm ribonucleoprotein-related, core domain containing protein
          Length = 591

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/591 (84%), Positives = 501/591 (84%)

Query: 1   MNHPQQTMPPRASANGFPHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSR 60
           MNHPQQTMPPRASANGFPHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSR
Sbjct: 1   MNHPQQTMPPRASANGFPHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSR 60

Query: 61  DRLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAA 120
           DRLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAA
Sbjct: 61  DRLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAA 120

Query: 121 DVVKKPETMIIPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYPEEREL 180
           DVVKKPETMIIPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYPEEREL
Sbjct: 121 DVVKKPETMIIPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYPEEREL 180

Query: 181 ERWAPDEGDSECIELEKYDRKGNRSWDQFETNAALFGVKSTFNEELYTTKLERGPHMREL 240
           ERWAPDEGDSECIELEKYDRKGNRSWDQFETNAALFGVKSTFNEELYTTKLERGPHMREL
Sbjct: 181 ERWAPDEGDSECIELEKYDRKGNRSWDQFETNAALFGVKSTFNEELYTTKLERGPHMREL 240

Query: 241 EKHASRIAREIEGEDTKDMHLAEERGLYLDDDFDHDEEIKYSAVRRDTDNTKFKSSTNVL 300
           EKHASRIAREIEGEDTKDMHLAEERGLYLDDDFDHDEEIKYSAVRRDTDNTKFKSSTNVL
Sbjct: 241 EKHASRIAREIEGEDTKDMHLAEERGLYLDDDFDHDEEIKYSAVRRDTDNTKFKSSTNVL 300

Query: 301 SNTNQVDSLTRAGNTNPKALLSTADEESSSHLFGTDLPVTNNVSQLVSQSQLNKLLPIDE 360
           SNTNQVDSLTRAGNTNPKALLSTADEESSSHLFGTDLPVTNNVSQLVSQSQLNKLLPIDE
Sbjct: 301 SNTNQVDSLTRAGNTNPKALLSTADEESSSHLFGTDLPVTNNVSQLVSQSQLNKLLPIDE 360

Query: 361 SRLDDKLTKDSSGNRDTSNLQTENXXXXXXXXXXXXDLEVPXXXXXXXXXXXXXXXXXXX 420
           SRLDDKLTKDSSGNRDTSNLQTEN            DLEVP                   
Sbjct: 361 SRLDDKLTKDSSGNRDTSNLQTENIISEGGRSSISEDLEVPSSSSHASEPSSSGQAKKSS 420

Query: 421 XXXXXXXXXXRKVPSSGEYVNXXXXXXXXXXXXXXXXXXXXVACAPGXXXXXXXXXXXXX 480
                     RKVPSSGEYVN                    VACAPG             
Sbjct: 421 ESLPADSSLSRKVPSSGEYVNSSQGPGSSTSSTSERIAASSVACAPGLSPSSSMGSLSSE 480

Query: 481 XXXXNPNAKEFKLNPNAKSFTPSTSVRPPQPPASDGPYYYANNMPTAPLGPPMFPPAYGG 540
               NPNAKEFKLNPNAKSFTPSTSVRPPQPPASDGPYYYANNMPTAPLGPPMFPPAYGG
Sbjct: 481 KSSLNPNAKEFKLNPNAKSFTPSTSVRPPQPPASDGPYYYANNMPTAPLGPPMFPPAYGG 540

Query: 541 QPMVYNAQPGPSPQGYMHPAXXXXXXXXXXXXTRPVYYYAPEMQQYRGRNF 591
           QPMVYNAQPGPSPQGYMHPA            TRPVYYYAPEMQQYRGRNF
Sbjct: 541 QPMVYNAQPGPSPQGYMHPAGPQYGQQMMMGQTRPVYYYAPEMQQYRGRNF 591



>AK109980 
          Length = 1034

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 129/254 (50%), Gaps = 32/254 (12%)

Query: 61  DRLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDK-DLGVIMKMAQVIKDGSARGQKSA 119
           DR++++L  LIG  V V VK GS   GI  A N++  +LGV +  AQ I    A+  +  
Sbjct: 125 DRMMFLLVTLIGNPVTVTVKGGSQYFGIFSAANTEGGELGVALASAQQIPPADAKDAQPQ 184

Query: 120 ADVVKKPETMIIPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYP--EE 177
              +K   +++I  ++L  I A +V +  D+  +     +++    D+ IS++  P    
Sbjct: 185 LGALK--SSLLINAKDLESIQAAEVRVQ-DQAKEMREAREKEAFRTDTEISKAFDPLGSG 241

Query: 178 RELERWAP---------------------DEGDSECIELEKYDRKGNRSWDQFETNAALF 216
           R L++W+                      D   S    LE  D   N+ WDQF  N A F
Sbjct: 242 RALQKWSDDPDLADLDDHSSKLPAWASPSDAKASGAGGLE--DSNSNKPWDQFAANEARF 299

Query: 217 GVKSTFNEELYTTKLER-GPHMRELEKHASRIAREIEGEDTKDMHLAEERGLYLDDDFDH 275
           G+KS + E LYTTKL+R G   R+ E+ A RIAREI G+ T + H+AEERG    DD   
Sbjct: 300 GIKSNYEENLYTTKLDRTGKDFRDREREADRIAREIMGQATNNPHMAEERGHA--DDSGV 357

Query: 276 DEEIKYSAVRRDTD 289
           +EE KY AV R+ +
Sbjct: 358 NEEDKYGAVVRNPN 371



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,729,530
Number of extensions: 937300
Number of successful extensions: 3259
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3255
Number of HSP's successfully gapped: 2
Length of query: 591
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 485
Effective length of database: 11,501,117
Effective search space: 5578041745
Effective search space used: 5578041745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)