BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0471100 Os02g0471100|AK121179
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0471100  Conserved hypothetical protein                      257   2e-69

>Os02g0471100 Conserved hypothetical protein
          Length = 141

 Score =  257 bits (657), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/141 (92%), Positives = 131/141 (92%)

Query: 1   MTASSRRPTPLSPLWGAPLQPSVGLQVEVEVTDAEGKRREGTRALSIDHAFIPTLSPTQM 60
           MTASSRRPTPLSPLWGAPLQPSVGLQVEVEVTDAEGKRREGTRALSIDHAFIPTLSPTQM
Sbjct: 1   MTASSRRPTPLSPLWGAPLQPSVGLQVEVEVTDAEGKRREGTRALSIDHAFIPTLSPTQM 60

Query: 61  SLSRRLAVLRSHLHLGAPSSEGDQDIMCAEQSAGVLTSPCAAASIAGTGREELCVLPYHP 120
           SLSRRLAVLRSHLHLGAPSSEGDQDIMCAEQSAGVLTSPCAAASIAGTGREELCVLPYHP
Sbjct: 61  SLSRRLAVLRSHLHLGAPSSEGDQDIMCAEQSAGVLTSPCAAASIAGTGREELCVLPYHP 120

Query: 121 RRSAGLQGXXXXXXXXXXLGE 141
           RRSAGLQG          LGE
Sbjct: 121 RRSAGLQGSSFSSPRLSSLGE 141



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,908,575
Number of extensions: 206010
Number of successful extensions: 572
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)