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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0471100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.16 (0.0364) R2 : 0.55
β1 : -0.795 (0.136) R2dD : 0.0357 R2D : -0.00771
β2 : 3.29 (0.152) R2dC : 1.42 R2C : -0.324
β3 : 3.16 (0.193) R2dE : 0.845 R2E : -0.913
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0813) R2dN8 : 0.00601 R2N8 : 0.0328
σ : 0.669
deviance : 206.21
__
_____
C
peak time of C : 2.07
E
wheather : temperature
threshold : 16.61
memory length : 724
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.43
open length of G : 8.77

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.43 0.636 5.17 -0.843 2.66 2.49 -2.69 -0.406 0.141 2.18 18.8 752 1.86 8.92
183.5 0.631 5.16 -0.788 2.69 2.51 -2.56 -- 0.149 2.18 18.7 757 1.85 8.92
191.64 0.645 5.08 -0.323 3.94 3.53 -- 3.67 0.341 1.99 13.52 738 3.03 7.83
206.21 0.669 5.16 -0.795 3.29 3.16 -- -- 0.16 2.07 16.61 724 2.43 8.77
381.1 0.909 4.97 -0.121 -- 2.03 -- 4.03 0.431 -- 1.324 7254 2.78 8.66
285.18 0.792 5.05 -0.247 1.29 -- -3.43 -- 0.601 2.68 -- -- -- --
326.2 0.846 5.04 -0.162 1.28 -- -- -- 0.622 2.52 -- -- -- --
341.08 0.86 5.13 -0.784 -- 2.04 -- -- 0.216 -- -16.01 2951 2.6 6.18
221.02 0.692 5.13 -- 3.26 3.07 -- -- 0.279 2.07 16.49 707 2.63 8.73
422.4 0.96 5.03 -0.107 -- -- -- -- 0.654 -- -- -- -- --
326.89 0.846 5.04 -- 1.28 -- -- -- 0.64 2.52 -- -- -- --
353.56 0.876 5.1 -- -- 1.75 -- -- 0.373 -- -20.28 2955 2.75 6
422.71 0.96 5.03 -- -- -- -- -- 0.665 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.47 temperature 20 720 > th dose dependent rect. 2 9
39 192.99 temperature 15 720 > th dose dependent sin 6 NA
45 193.37 temperature 25 720 < th dose dependent rect. 4 5
123 198.09 temperature 20 720 < th dose independent rect. 4 1
157 199.70 temperature 25 270 > th dose independent rect. 3 17
169 200.22 temperature 25 270 < th dose independent rect. 7 9
181 200.73 temperature 25 720 < th dose dependent sin 5 NA
190 201.08 temperature 20 10 > th dose dependent rect. 6 16
206 201.61 temperature 25 720 < th dose dependent rect. 23 11
284 203.86 temperature 25 270 > th dose independent sin 1 NA
334 205.20 temperature 20 10 > th dose dependent rect. 3 21
335 205.21 temperature 25 720 > th dose independent rect. 3 9
344 205.31 temperature 15 10 > th dose dependent rect. 3 23
346 205.42 temperature 20 10 > th dose dependent rect. 3 19
399 206.39 temperature 20 10 > th dose dependent rect. 6 18
404 206.45 temperature 20 270 > th dose dependent sin 2 NA
435 207.04 temperature 25 270 < th dose independent sin 1 NA
627 210.88 temperature 20 720 > th dose independent rect. 3 4
636 210.96 temperature 30 10 < th dose dependent sin 22 NA
661 211.24 temperature 20 10 > th dose dependent rect. 1 23
687 211.83 temperature 30 10 < th dose dependent rect. 9 9
703 211.95 temperature 20 10 > th dose dependent rect. 23 23
733 212.49 temperature 30 720 < th dose dependent rect. 9 1
747 212.66 temperature 20 720 < th dose independent sin 7 NA
761 212.87 temperature 30 90 < th dose dependent rect. 9 10
766 212.94 temperature 20 1440 > th dose independent rect. 21 9
807 213.51 temperature 20 1440 > th dose independent rect. 23 7
816 213.55 temperature 25 1440 < th dose dependent rect. 21 1
843 213.85 temperature 20 10 > th dose dependent sin 23 NA
946 214.67 temperature 20 720 > th dose independent sin 5 NA
978 214.87 temperature 20 10 > th dose dependent rect. 6 23