BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0470600 Os02g0470600|Os02g0470600
(1185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0470600 Pleckstrin homology-type domain containing pro... 2288 0.0
Os08g0116700 Conserved hypothetical protein 85 4e-16
>Os02g0470600 Pleckstrin homology-type domain containing protein
Length = 1185
Score = 2288 bits (5928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1120/1185 (94%), Positives = 1120/1185 (94%)
Query: 1 MFEGHVLYLLRKYLGEYVEGLSVETLRISVWQGXXXXXXXXXXXXXXNSLRLPVTVKAGF 60
MFEGHVLYLLRKYLGEYVEGLSVETLRISVWQG NSLRLPVTVKAGF
Sbjct: 1 MFEGHVLYLLRKYLGEYVEGLSVETLRISVWQGDVVLKDLKLKADALNSLRLPVTVKAGF 60
Query: 61 VGTITLKVPWKSLGKEPVIVLIDRLFVLAHPAPDGQTLKEEDREKLFEAKLQQIXXXXXX 120
VGTITLKVPWKSLGKEPVIVLIDRLFVLAHPAPDGQTLKEEDREKLFEAKLQQI
Sbjct: 61 VGTITLKVPWKSLGKEPVIVLIDRLFVLAHPAPDGQTLKEEDREKLFEAKLQQIEAAEAA 120
Query: 121 XXXXXSRSSKGGPVPGSNSWLYNLISTIIGNLKVTISNVHIRYEDSVSNSGHPFASGFTL 180
SRSSKGGPVPGSNSWLYNLISTIIGNLKVTISNVHIRYEDSVSNSGHPFASGFTL
Sbjct: 121 TLEATSRSSKGGPVPGSNSWLYNLISTIIGNLKVTISNVHIRYEDSVSNSGHPFASGFTL 180
Query: 181 SRLAAVTVDEDGNETFDAGVALDKLRKSVELHRLAIYHDSDSSAWKLAKKWEDLNPTEWG 240
SRLAAVTVDEDGNETFDAGVALDKLRKSVELHRLAIYHDSDSSAWKLAKKWEDLNPTEWG
Sbjct: 181 SRLAAVTVDEDGNETFDAGVALDKLRKSVELHRLAIYHDSDSSAWKLAKKWEDLNPTEWG 240
Query: 241 ENDLPQIFQDGIDDHSGNSVWAMNRNYLVYPINGTLNYKRLGKQERGGPDIPLEKASLVL 300
ENDLPQIFQDGIDDHSGNSVWAMNRNYLVYPINGTLNYKRLGKQERGGPDIPLEKASLVL
Sbjct: 241 ENDLPQIFQDGIDDHSGNSVWAMNRNYLVYPINGTLNYKRLGKQERGGPDIPLEKASLVL 300
Query: 301 SDVSLTVTEAQYYDGIKLLETFSRFRTRVDVSHLRPIVPVKVDCRAWWRYAVLAGWQQVK 360
SDVSLTVTEAQYYDGIKLLETFSRFRTRVDVSHLRPIVPVKVDCRAWWRYAVLAGWQQVK
Sbjct: 301 SDVSLTVTEAQYYDGIKLLETFSRFRTRVDVSHLRPIVPVKVDCRAWWRYAVLAGWQQVK 360
Query: 361 LAVGGPQIISSLTNPLPWSAHWHMEFALMVVDTACEATHVCGVVHLKDSMELQQRTAQVV 420
LAVGGPQIISSLTNPLPWSAHWHMEFALMVVDTACEATHVCGVVHLKDSMELQQRTAQVV
Sbjct: 361 LAVGGPQIISSLTNPLPWSAHWHMEFALMVVDTACEATHVCGVVHLKDSMELQQRTAQVV 420
Query: 421 QGTRGERSCVXXXXXXXXXXXXXXXLARGASSVGDDGLKVTWPCRLREEREAPSYVREDV 480
QGTRGERSCV LARGASSVGDDGLKVTWPCRLREEREAPSYVREDV
Sbjct: 421 QGTRGERSCVGGPSGQWGTTGQGSGLARGASSVGDDGLKVTWPCRLREEREAPSYVREDV 480
Query: 481 NSAELPSEENALLEPQLDEEERLTKEEWQAINKLLSYQPEDDLSSPLEKVSPNTTRFLVD 540
NSAELPSEENALLEPQLDEEERLTKEEWQAINKLLSYQPEDDLSSPLEKVSPNTTRFLVD
Sbjct: 481 NSAELPSEENALLEPQLDEEERLTKEEWQAINKLLSYQPEDDLSSPLEKVSPNTTRFLVD 540
Query: 541 VSIGQAAARIINIDRTEILCGRFEKLQVVTKLYPKSTRCDVTLRYCGLSSPEGSLAQSVV 600
VSIGQAAARIINIDRTEILCGRFEKLQVVTKLYPKSTRCDVTLRYCGLSSPEGSLAQSVV
Sbjct: 541 VSIGQAAARIINIDRTEILCGRFEKLQVVTKLYPKSTRCDVTLRYCGLSSPEGSLAQSVV 600
Query: 601 SEGKSNALDVSFVRAPVGLDLDWQLVAKISPCHVTVLKGSYERFLEFIKRSKAVSPTVTM 660
SEGKSNALDVSFVRAPVGLDLDWQLVAKISPCHVTVLKGSYERFLEFIKRSKAVSPTVTM
Sbjct: 601 SEGKSNALDVSFVRAPVGLDLDWQLVAKISPCHVTVLKGSYERFLEFIKRSKAVSPTVTM 660
Query: 661 ETATALQASLLSNLDTHDHMKIEQVTRRAQEQLQMVLEEQSSFGLDIDLDAPKVRIPLIT 720
ETATALQASLLSNLDTHDHMKIEQVTRRAQEQLQMVLEEQSSFGLDIDLDAPKVRIPLIT
Sbjct: 661 ETATALQASLLSNLDTHDHMKIEQVTRRAQEQLQMVLEEQSSFGLDIDLDAPKVRIPLIT 720
Query: 721 CQPLLGNEHFVLDLGHFTLHTRDGTREEERRSLYSRFYIAGRDMAAFVVCDTAEDIYSVP 780
CQPLLGNEHFVLDLGHFTLHTRDGTREEERRSLYSRFYIAGRDMAAFVVCDTAEDIYSVP
Sbjct: 721 CQPLLGNEHFVLDLGHFTLHTRDGTREEERRSLYSRFYIAGRDMAAFVVCDTAEDIYSVP 780
Query: 781 ENQRVLSGPTVDANQFCSLLDRCGMSVIIDQIKVPHPSYPSTRVSFQVPNLDIHFSPKRY 840
ENQRVLSGPTVDANQFCSLLDRCGMSVIIDQIKVPHPSYPSTRVSFQVPNLDIHFSPKRY
Sbjct: 781 ENQRVLSGPTVDANQFCSLLDRCGMSVIIDQIKVPHPSYPSTRVSFQVPNLDIHFSPKRY 840
Query: 841 GKIVELLGVLCKLKGXXXXXXXXXXXXXLAPWYPADLAGDARTLVWKGLGYSLAEWHTSY 900
GKIVELLGVLCKLKG LAPWYPADLAGDARTLVWKGLGYSLAEWHTSY
Sbjct: 841 GKIVELLGVLCKLKGSDSEDSDSCENCNLAPWYPADLAGDARTLVWKGLGYSLAEWHTSY 900
Query: 901 VVLSGMYLYILESEVSQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKMINR 960
VVLSGMYLYILESEVSQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKMINR
Sbjct: 901 VVLSGMYLYILESEVSQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKMINR 960
Query: 961 SLHNPRKELADGDAFEKCTSDPGNYESSRPCANNGDEEAETTKSVKEDVLTMALESTSTL 1020
SLHNPRKELADGDAFEKCTSDPGNYESSRPCANNGDEEAETTKSVKEDVLTMALESTSTL
Sbjct: 961 SLHNPRKELADGDAFEKCTSDPGNYESSRPCANNGDEEAETTKSVKEDVLTMALESTSTL 1020
Query: 1021 IIEYHNEIEKANWMKALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSLGSVDLLVNGS 1080
IIEYHNEIEKANWMKALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSLGSVDLLVNGS
Sbjct: 1021 IIEYHNEIEKANWMKALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSLGSVDLLVNGS 1080
Query: 1081 VVETKLSLYAKLDRKKKDPEEVVMLELLXXXXXXXXXXXXNNRMKVEALYQRSLASRTEV 1140
VVETKLSLYAKLDRKKKDPEEVVMLELL NNRMKVEALYQRSLASRTEV
Sbjct: 1081 VVETKLSLYAKLDRKKKDPEEVVMLELLGSGGKIGSTTSKNNRMKVEALYQRSLASRTEV 1140
Query: 1141 STLGGKRHKRSKCVGWILHFDHKGDRPRGAAVCTSQACRLSNIYY 1185
STLGGKRHKRSKCVGWILHFDHKGDRPRGAAVCTSQACRLSNIYY
Sbjct: 1141 STLGGKRHKRSKCVGWILHFDHKGDRPRGAAVCTSQACRLSNIYY 1185
>Os08g0116700 Conserved hypothetical protein
Length = 539
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 158/366 (43%), Gaps = 48/366 (13%)
Query: 1 MFEGHVLYLLRKYLGEYVEGLSVETLRISVWQGXXXXXXXXXXXXXXNSLRLPVTVKAGF 60
MFE V +L LG YV + L I++W + L+LP +K G
Sbjct: 1 MFEDLVSKVLPALLGRYV-SFQKDQLTINIWNQEIILVDVELILEAFDYLQLPFALKKGR 59
Query: 61 VGTITLKVPWKSLGKEPVIVLIDRLFVLAHPAPDGQTLKEEDREKLFEAKLQQIXXXXXX 120
+G +++++PWK+LG +I+ I+ +F+ A P D + + ++ + KL ++
Sbjct: 60 IGKLSVRIPWKTLGWGAIIIAIEDVFICACPREDSEWSSDSLDKRELDGKLAKLKAIELA 119
Query: 121 XXXXXSRSSKGGPVPGSNSWLYNLISTIIGNLKVTISNVHIRYEDSVSNSGHPFASGFTL 180
++ G S L +++ I+ N++V+I NVHI Y D+ + G+ F G
Sbjct: 120 KISRRITDNQTG-----QSLLSYILAKILDNIQVSIRNVHITYADNYKDQGN-FMFGLEF 173
Query: 181 SRLAAVTVDEDGNETFDAGVAL----DKLRKSVELHRLAIY-HDSDSSAWKLAKKWEDLN 235
S L+ T + ++F + + D++ K+VE+ + IY H D
Sbjct: 174 SSLSIQT--DPKKQSFAMSLMVMSRQDEVNKTVEISNVGIYCHHLDE------------- 218
Query: 236 PTEWGENDLPQIFQDGIDDHSGNSVWAMNRN-YLVYPINGTLNY--KRLGKQERGGP--D 290
+ G D + + + S + A R+ YL+ P N T+ + GK + G P +
Sbjct: 219 --QQGSCDTGGLTE---TNFSFSHELAHPRDAYLLNPFNVTIFVLANKAGKLD-GAPRYN 272
Query: 291 IPLEKASLVLSDVSLTVTEAQYYDGIKLLETFSRFRTRVDVSHLRPIVPV-----KVDCR 345
I +E +L+LS + E Q + L + FS R RP K R
Sbjct: 273 ITVELTALILS-----IDEIQIQQILNLCDYFSICALRTKYGRYRPSQSSLSKRHKGWQR 327
Query: 346 AWWRYA 351
WW YA
Sbjct: 328 MWWHYA 333
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 38,182,156
Number of extensions: 1557269
Number of successful extensions: 3710
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3709
Number of HSP's successfully gapped: 2
Length of query: 1185
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1073
Effective length of database: 11,187,833
Effective search space: 12004544809
Effective search space used: 12004544809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)