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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0470600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pleckstrin homology-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0205) R2 : 0.316
β1 : -0.158 (0.0756) R2dD : 0.00769 R2D : -0.0066
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.25 (0.235) R2dE : 0.184 R2E : -0.0833
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -22.5 (1.6) R2dD*E : 0.401 R2D*E : 0.126
γ1 : -0.0254 (0.0438) R2dN8 : 0.000419 R2N8 : 0.000561
σ : 0.383
deviance : 67.67
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 74.18
memory length : 40
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.4
open length of G : 0.451

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.54 0.386 3.08 -0.159 0.000517 2.2 0.217 -21.8 -0.0208 3.86 74.33 42 19.4 0.452
94.67 0.453 3.07 -0.0532 0.0234 0.814 -0.648 -- -0.0338 18.5 79.51 20 19.8 1.81
67.67 0.383 3.09 -0.162 0.00537 2.2 -- -22.1 -0.0244 0.664 74.24 42 19.4 0.467
93.02 0.449 3.08 -0.0398 0.0158 0.895 -- -- -0.0723 5.72 84.16 21 20 1
67.67 0.383 3.08 -0.158 -- 2.25 -- -22.5 -0.0254 -- 74.18 40 19.4 0.451
97.58 0.463 3.08 -0.0439 0.047 -- -0.666 -- -0.0437 18.5 -- -- -- --
98.65 0.465 3.08 -0.0356 0.049 -- -- -- -0.0462 20.3 -- -- -- --
93.06 0.449 3.08 -0.0227 -- 0.901 -- -- -0.0718 -- 84.15 22 20 1
92.97 0.449 3.08 -- 0.0377 0.897 -- -- -0.072 7.83 84.19 21 20 0.996
98.78 0.464 3.08 -0.036 -- -- -- -- -0.0467 -- -- -- -- --
98.68 0.465 3.08 -- 0.0491 -- -- -- -0.0422 20.2 -- -- -- --
93.07 0.449 3.08 -- -- 0.896 -- -- -0.0689 -- 84.16 22 20 0.983
98.82 0.464 3.08 -- -- -- -- -- -0.0427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.98 humidity 80.0 30 < th dose dependent rect. 19 1
78 84.11 humidity 90.0 30 < th dose independent rect. 19 2
95 84.94 atmosphere 1005.0 90 < th dose independent rect. 18 1
96 85.58 radiation 20.0 270 > th dose dependent rect. 16 1
119 86.59 wind 3.0 30 > th dose independent rect. 19 2
121 86.87 humidity 60.0 270 < th dose independent rect. 16 1
125 87.23 humidity 60.0 270 < th dose independent rect. 16 3
129 87.47 atmosphere 1010.0 10 < th dose dependent rect. 20 1
131 87.68 temperature 20.0 30 > th dose independent rect. 19 2
153 88.17 humidity 60.0 270 < th dose dependent rect. 16 1
159 88.39 temperature 30.0 10 < th dose dependent rect. 20 1
189 89.13 atmosphere 1005.0 10 > th dose independent rect. 20 1
190 89.15 wind 5.0 10 < th dose independent rect. 20 1
196 89.30 wind 1.0 30 > th dose dependent rect. 19 2
199 89.39 wind 9.0 10 < th dose dependent rect. 20 1
206 89.46 temperature 10.0 10 > th dose independent rect. 20 1
208 89.46 temperature 30.0 10 < th dose independent rect. 20 1
209 89.46 humidity 50.0 10 > th dose independent rect. 20 1
215 89.46 radiation 1.0 10 < th dose independent rect. 20 1
220 89.46 precipitation 0.1 10 < th dose independent rect. 20 1
221 89.46 temperature 10.0 10 > th dose independent rect. 21 23
223 89.46 radiation 1.0 10 < th dose dependent rect. 20 1
228 89.46 precipitation 0.1 10 < th dose dependent rect. 20 1
230 89.49 wind 9.0 30 < th dose independent rect. 21 22
231 89.49 radiation 1.0 1440 < th dose dependent rect. 20 2
236 89.63 temperature 10.0 30 > th dose dependent rect. 21 22
240 89.71 radiation 10.0 43200 < th dose dependent rect. 20 2
254 89.84 temperature 10.0 1440 > th dose independent rect. 20 2
257 89.84 temperature 30.0 1440 < th dose independent rect. 20 2
261 89.84 humidity 50.0 1440 > th dose independent rect. 20 2
267 89.84 atmosphere 995.0 1440 > th dose independent rect. 20 2
268 89.84 radiation 1.0 1440 < th dose independent rect. 20 2
288 89.84 temperature 10.0 1440 > th dose independent rect. 22 22
305 89.95 precipitation 0.1 30 < th dose independent rect. 21 22
306 89.95 precipitation 0.1 30 < th dose dependent rect. 21 22
331 90.05 atmosphere 995.0 30 > th dose independent rect. 21 22
369 90.24 atmosphere 995.0 10 > th dose dependent rect. 20 1
372 90.27 temperature 10.0 10 > th dose dependent rect. 20 1
395 90.59 humidity 80.0 270 < th dose dependent rect. 16 4
429 90.98 humidity 50.0 30 > th dose independent rect. 21 22
535 91.24 humidity 50.0 10 > th dose dependent rect. 20 1
539 91.27 temperature 30.0 30 < th dose independent rect. 21 22
547 91.34 radiation 1.0 270 > th dose dependent rect. 17 2
628 91.71 temperature 15.0 270 > th dose independent rect. 5 11
719 91.86 humidity 90.0 30 < th dose independent rect. 8 11
728 91.88 radiation 1.0 90 < th dose dependent rect. 9 12
766 91.93 radiation 1.0 90 < th dose dependent rect. 15 6
770 91.94 atmosphere 1005.0 270 < th dose dependent rect. 16 1
778 91.97 radiation 1.0 90 < th dose dependent rect. 13 8
797 92.05 temperature 30.0 30 < th dose dependent rect. 2 19
850 92.24 temperature 30.0 90 < th dose dependent rect. 11 10
897 92.29 atmosphere 1015.0 30 < th dose independent rect. 21 22
905 92.31 wind 1.0 30 > th dose independent rect. 21 22
929 92.35 humidity 90.0 30 < th dose independent rect. 6 13
933 92.36 temperature 30.0 10 < th dose dependent rect. 10 11
955 92.47 radiation 1.0 90 < th dose independent rect. 9 12
972 92.50 temperature 10.0 30 > th dose dependent rect. 8 11
987 92.56 radiation 1.0 90 < th dose independent rect. 13 8