BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0454300 Os02g0454300|AK108068
         (106 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0454300  Conserved hypothetical protein                       91   3e-19
Os06g0492550  Conserved hypothetical protein                       66   6e-12

>Os02g0454300 Conserved hypothetical protein
          Length = 106

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 45/60 (75%)

Query: 18 TSKVAIAVHPSPTYRRPSTSGHRRSRCFXXXXXXXXXXXXXXXDAQEPGALFSFWVRRQN 77
          TSKVAIAVHPSPTYRRPSTSGHRRSRCF               DAQEPGALFSFWVRRQN
Sbjct: 18 TSKVAIAVHPSPTYRRPSTSGHRRSRCFRHPSRPSPATRRTSSDAQEPGALFSFWVRRQN 77



>Os06g0492550 Conserved hypothetical protein
          Length = 91

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 18 TSKVAIAVHPSPTYRRPSTSGHRRSRCFXXXXXXXXXXXXXXXDAQEPGALFSFWV 73
          TSKVAI VHPSPT+RR STSGHRRSRC                 AQEPGALFSFWV
Sbjct: 18 TSKVAITVHPSPTHRRYSTSGHRRSRCL----RPSPATRRTSSGAQEPGALFSFWV 69



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.131    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,734,256
Number of extensions: 39801
Number of successful extensions: 149
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)