BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0435000 Os02g0435000|AK102414
         (372 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0435000  Translocation protein Sec62 family protein          731   0.0  

>Os02g0435000 Translocation protein Sec62 family protein
          Length = 372

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 23  PVSRSSRAGSQEKPAPNKDVYQLFAEKVRDNKQLESRWAIMQETRVEYFRGKDFTTFMRN 82
           PVSRSSRAGSQEKPAPNKDVYQLFAEKVRDNKQLESRWAIMQETRVEYFRGKDFTTFMRN
Sbjct: 23  PVSRSSRAGSQEKPAPNKDVYQLFAEKVRDNKQLESRWAIMQETRVEYFRGKDFTTFMRN 82

Query: 83  HPEVREILGPDKDLEVEDIVNTLLSKNLVIRCDRVWKTVRPGKKKLSSWPAHLEIHREQV 142
           HPEVREILGPDKDLEVEDIVNTLLSKNLVIRCDRVWKTVRPGKKKLSSWPAHLEIHREQV
Sbjct: 83  HPEVREILGPDKDLEVEDIVNTLLSKNLVIRCDRVWKTVRPGKKKLSSWPAHLEIHREQV 142

Query: 143 FTENDGFFAWMFLKRRTLWQTILSFVWPLFALAVCLFPVYPYQCKIVVLYSCAGALLFIV 202
           FTENDGFFAWMFLKRRTLWQTILSFVWPLFALAVCLFPVYPYQCKIVVLYSCAGALLFIV
Sbjct: 143 FTENDGFFAWMFLKRRTLWQTILSFVWPLFALAVCLFPVYPYQCKIVVLYSCAGALLFIV 202

Query: 203 SILLLRAAIFGILWVLLGKRVWFFPNINAEETTFRELVRFWPEKDEGERPKWTSRLFYAT 262
           SILLLRAAIFGILWVLLGKRVWFFPNINAEETTFRELVRFWPEKDEGERPKWTSRLFYAT
Sbjct: 203 SILLLRAAIFGILWVLLGKRVWFFPNINAEETTFRELVRFWPEKDEGERPKWTSRLFYAT 262

Query: 263 VAVLVILLLRHHAPDEAARARYQKKVSNIIDDVLEWSPKLALSGMMEKHTGTNASETSNH 322
           VAVLVILLLRHHAPDEAARARYQKKVSNIIDDVLEWSPKLALSGMMEKHTGTNASETSNH
Sbjct: 263 VAVLVILLLRHHAPDEAARARYQKKVSNIIDDVLEWSPKLALSGMMEKHTGTNASETSNH 322

Query: 323 TSGTGSSPVPPTNEGNTAKADPDMDRQTNSDKVQDGDEYGDDMRTRFSEV 372
           TSGTGSSPVPPTNEGNTAKADPDMDRQTNSDKVQDGDEYGDDMRTRFSEV
Sbjct: 323 TSGTGSSPVPPTNEGNTAKADPDMDRQTNSDKVQDGDEYGDDMRTRFSEV 372



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,630,847
Number of extensions: 537775
Number of successful extensions: 1689
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1689
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,709,973
Effective search space: 3161692710
Effective search space used: 3161692710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)