Os02g0435000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Translocation protein Sec62 family protein.
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Os02g0435000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Translocation protein Sec62 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.03 | 0.205 | 11.8 | 0.0409 | 0.415 | -0.301 | -0.0327 | 0.445 | -0.00901 | 2.3 | 19.37 | 83 | -- | -- |
| 19.65 | 0.206 | 11.8 | 0.0873 | 0.415 | -0.351 | 0.128 | -- | -0.00521 | 2.14 | 19.5 | 62 | -- | -- |
| 18.91 | 0.203 | 11.8 | 0.0368 | 0.418 | -0.292 | -- | 0.451 | -0.00899 | 2.25 | 19.3 | 58 | -- | -- |
| 19.66 | 0.207 | 11.8 | 0.0958 | 0.421 | -0.352 | -- | -- | 0.0037 | 2.28 | 19.4 | 60 | -- | -- |
| 28.53 | 0.25 | 11.8 | 0.0994 | -- | -0.134 | -- | 0.529 | 0.0232 | -- | 19.3 | 58 | -- | -- |
| 23.32 | 0.226 | 11.8 | 0.204 | 0.354 | -- | 0.193 | -- | 0.0581 | 2.35 | -- | -- | -- | -- |
| 23.45 | 0.227 | 11.8 | 0.199 | 0.355 | -- | -- | -- | 0.0568 | 2.45 | -- | -- | -- | -- |
| 27.87 | 0.246 | 11.8 | -0.00116 | -- | -0.429 | -- | -- | -0.0236 | -- | 19.1 | 2647 | -- | -- |
| 19.9 | 0.208 | 11.8 | -- | 0.425 | -0.364 | -- | -- | -0.00619 | 2.27 | 19.3 | 60 | -- | -- |
| 30.89 | 0.26 | 11.8 | 0.214 | -- | -- | -- | -- | 0.0656 | -- | -- | -- | -- | -- |
| 24.49 | 0.232 | 11.8 | -- | 0.359 | -- | -- | -- | 0.0347 | 2.46 | -- | -- | -- | -- |
| 27.87 | 0.246 | 11.8 | -- | -- | -0.434 | -- | -- | -0.0226 | -- | 18.96 | 2643 | -- | -- |
| 32.1 | 0.264 | 11.8 | -- | -- | -- | -- | -- | 0.0419 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.08 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 10 |
| 2 | 18.09 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 15 | 18.29 | temperature | 20 | 90 | > th | dose independent | sin | 10 | NA |
| 21 | 18.33 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 45 | 18.51 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 11 |
| 95 | 18.68 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 138 | 18.78 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 196 | 18.88 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 211 | 18.92 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 306 | 19.06 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 329 | 19.09 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 350 | 19.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 374 | 19.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 405 | 19.16 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 446 | 19.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 480 | 19.22 | temperature | 15 | 30 | > th | dose dependent | sin | 10 | NA |
| 501 | 19.24 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 597 | 19.31 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 683 | 19.38 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 743 | 19.41 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 780 | 19.43 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 785 | 19.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 799 | 19.44 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 812 | 19.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 818 | 19.46 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 852 | 19.48 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 857 | 19.48 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 897 | 19.50 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 902 | 19.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 903 | 19.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 910 | 19.51 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 19 |
| 920 | 19.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 937 | 19.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 972 | 19.54 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 977 | 19.54 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 23 |
| 988 | 19.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 989 | 19.54 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 20 |