BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0330700 Os02g0330700|015-022-H11
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0330700  Conserved hypothetical protein                      217   2e-57
Os10g0388600  Peptidase C48, SUMO/Sentrin/Ubl1 family protein      69   7e-13
Os07g0437700                                                       65   1e-11

>Os02g0330700 Conserved hypothetical protein
          Length = 104

 Score =  217 bits (552), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MDNNIGGSTPTSLRRSCPFADINNASAGDSPKKRNNIGVFTPTSLTKSSDASGFGKDPVH 60
           MDNNIGGSTPTSLRRSCPFADINNASAGDSPKKRNNIGVFTPTSLTKSSDASGFGKDPVH
Sbjct: 1   MDNNIGGSTPTSLRRSCPFADINNASAGDSPKKRNNIGVFTPTSLTKSSDASGFGKDPVH 60

Query: 61  HDNVHLEKTIGSWSEIHYKLSHCKAVRSLRFDPIWSCFIYYLDS 104
           HDNVHLEKTIGSWSEIHYKLSHCKAVRSLRFDPIWSCFIYYLDS
Sbjct: 61  HDNVHLEKTIGSWSEIHYKLSHCKAVRSLRFDPIWSCFIYYLDS 104



>Os10g0388600 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
          Length = 980

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/36 (75%), Positives = 33/36 (91%)

Query: 51  ASGFGKDPVHHDNVHLEKTIGSWSEIHYKLSHCKAV 86
           A+GFGK PVHHDN++L +T+GSWSEIHYKLS CKA+
Sbjct: 860 ATGFGKVPVHHDNINLAETVGSWSEIHYKLSQCKAI 895



>Os07g0437700 
          Length = 114

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 50  DASGFGKDPVHHDNVHLEKTIGSWSEIHYKLSHCKAVRSLR 90
           +A+GFGKDPVHHDNV L KTI SWS+IHYKLS CK+   L 
Sbjct: 69  NATGFGKDPVHHDNVDLAKTISSWSKIHYKLSQCKSYAMLE 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,052,849
Number of extensions: 152927
Number of successful extensions: 374
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 3
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)