BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0316200 Os02g0316200|AK073932
         (424 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0316200  Cyclin-like F-box domain containing protein         694   0.0  

>Os02g0316200 Cyclin-like F-box domain containing protein
          Length = 424

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/413 (85%), Positives = 353/413 (85%)

Query: 12  GRRLAGNLSLRPGVASIIPGLPDDVAAVILCLLTFPDQXXXXXXXXXXXXXXXXXXXXXX 71
           GRRLAGNLSLRPGVASIIPGLPDDVAAVILCLLTFPDQ                      
Sbjct: 12  GRRLAGNLSLRPGVASIIPGLPDDVAAVILCLLTFPDQSRLRATSRAWRLLLSAATLLPL 71

Query: 72  XXXXXXXXXXXXCLFPTDPSLASPILLDPAAPTAWWSLPPIPCSPQHYGLANFAAVAVGG 131
                       CLFPTDPSLASPILLDPAAPTAWWSLPPIPCSPQHYGLANFAAVAVGG
Sbjct: 72  RRSLRLPRRHLLCLFPTDPSLASPILLDPAAPTAWWSLPPIPCSPQHYGLANFAAVAVGG 131

Query: 132 QIYVLGGSRFDARSYPLDNPSPSAAAYRLDLALSRHRWERLPDMRVPRGSFACAPAPSGG 191
           QIYVLGGSRFDARSYPLDNPSPSAAAYRLDLALSRHRWERLPDMRVPRGSFACAPAPSGG
Sbjct: 132 QIYVLGGSRFDARSYPLDNPSPSAAAYRLDLALSRHRWERLPDMRVPRGSFACAPAPSGG 191

Query: 192 VIVAGGGSRHPTFPSYGSRTSGVELYDXXXXXXXXXXXMPRDRAGCVGFVAHGAGDGRED 251
           VIVAGGGSRHPTFPSYGSRTSGVELYD           MPRDRAGCVGFVAHGAGDGRED
Sbjct: 192 VIVAGGGSRHPTFPSYGSRTSGVELYDAAARAWRVTAAMPRDRAGCVGFVAHGAGDGRED 251

Query: 252 EFWXXXXXXXXXXXXXXXPSDVYCRDAVALGLWSGKWREIGDMWEEWERERLGPVAVISA 311
           EFW               PSDVYCRDAVALGLWSGKWREIGDMWEEWERERLGPVAVISA
Sbjct: 252 EFWVMGGYDGYTTVGGVVPSDVYCRDAVALGLWSGKWREIGDMWEEWERERLGPVAVISA 311

Query: 312 EDGRVTEVFMLDGHDIFRYNFSSNSWSKEATLRRKIPSTQSCGFIAMNGELYVLTSAKLP 371
           EDGRVTEVFMLDGHDIFRYNFSSNSWSKEATLRRKIPSTQSCGFIAMNGELYVLTSAKLP
Sbjct: 312 EDGRVTEVFMLDGHDIFRYNFSSNSWSKEATLRRKIPSTQSCGFIAMNGELYVLTSAKLP 371

Query: 372 VETSSPWKQSKKRLALEFQVYNPAAKMWRVLTTHPPVNVPIDFRTAALCTVEL 424
           VETSSPWKQSKKRLALEFQVYNPAAKMWRVLTTHPPVNVPIDFRTAALCTVEL
Sbjct: 372 VETSSPWKQSKKRLALEFQVYNPAAKMWRVLTTHPPVNVPIDFRTAALCTVEL 424



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,141,803
Number of extensions: 668183
Number of successful extensions: 1893
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1897
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 320
Effective length of database: 11,605,545
Effective search space: 3713774400
Effective search space used: 3713774400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)