BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0302500 Os02g0302500|J075032G05
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0302500  Conserved hypothetical protein                      370   e-103
AK058828                                                          352   2e-97
Os01g0704400  Conserved hypothetical protein                      322   2e-88

>Os02g0302500 Conserved hypothetical protein
          Length = 230

 Score =  370 bits (950), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/191 (96%), Positives = 184/191 (96%)

Query: 40  RLLLHRVADGXXXXXXXRGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGE 99
           RLLLHRVADG       RGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGE
Sbjct: 40  RLLLHRVADGSMSSSSSRGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGE 99

Query: 100 SEEGEADGNHPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAP 159
           SEEGEADGNHPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAP
Sbjct: 100 SEEGEADGNHPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAP 159

Query: 160 SRSGQLPQQQRVHGPLRCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLFFSNE 219
           SRSGQLPQQQRVHGPLRCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLFFSNE
Sbjct: 160 SRSGQLPQQQRVHGPLRCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLFFSNE 219

Query: 220 IDRIPMAVVTR 230
           IDRIPMAVVTR
Sbjct: 220 IDRIPMAVVTR 230



>AK058828 
          Length = 183

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/174 (99%), Positives = 173/174 (99%)

Query: 57  RGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGESEEGEADGNHPSVTLAL 116
           RGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGESEEGEADGNHPSVTLAL
Sbjct: 7   RGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGESEEGEADGNHPSVTLAL 66

Query: 117 QSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAPSRSGQLPQQQRVHGPLR 176
           QSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAPSRSGQLPQQQRVHGPLR
Sbjct: 67  QSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAPSRSGQLPQQQRVHGPLR 126

Query: 177 CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLFFSNEIDRIPMAVVTR 230
           CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKL FSNEIDRIPMAVVTR
Sbjct: 127 CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLSFSNEIDRIPMAVVTR 180



>Os01g0704400 Conserved hypothetical protein
          Length = 301

 Score =  322 bits (824), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/181 (88%), Positives = 163/181 (90%)

Query: 40  RLLLHRVADGXXXXXXXRGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGE 99
           RLLLHRVADG       RGPG LSTAPSQIQPSLIPDSPI TAPSQRRGG VAREMTGGE
Sbjct: 40  RLLLHRVADGSMSSSSSRGPGWLSTAPSQIQPSLIPDSPILTAPSQRRGGVVAREMTGGE 99

Query: 100 SEEGEADGNHPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAP 159
           SEEGEADGN PSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAG NGRSLAKAP
Sbjct: 100 SEEGEADGNPPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGRNGRSLAKAP 159

Query: 160 SRSGQLPQQQRVHGPLRCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLFFSNE 219
           SRSGQLPQQQRVHG L CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLR  FF  +
Sbjct: 160 SRSGQLPQQQRVHGLLHCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRNFFFRMK 219

Query: 220 I 220
           +
Sbjct: 220 L 220



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,872,378
Number of extensions: 446223
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1683
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)