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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0302500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.82 (0.0397) R2 : 0.198
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.648 (0.0961) R2dC : 0.0823 R2C : 0.034
β3 : 0.953 (0.107) R2dE : 0.145 R2E : 0.0953
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.243 (0.0834) R2dN8 : 0.0194 R2N8 : 0.0131
σ : 0.744
deviance : 255.36
__
_____
C
peak time of C : 0.161
E
wheather : humidity
threshold : 81.47
memory length : 22
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.85
open length of G : 14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.63 0.745 4.83 -0.263 0.638 0.943 -0.769 -0.126 -0.268 0.117 82 14 5.91 14
251.69 0.739 4.83 -0.268 0.638 0.947 -0.75 -- -0.269 0.123 82 13 5.92 14
254.09 0.742 4.83 -0.242 0.639 0.935 -- 0.0678 -0.268 0.17 81.67 15 5.89 14
253.95 0.742 4.83 -0.24 0.65 0.946 -- -- -0.269 0.0861 81.65 22 5.84 14.1
278.18 0.777 4.81 -0.243 -- 0.777 -- 0.132 -0.253 -- 81 12 5.9 14.6
295.16 0.805 4.83 -0.337 0.496 -- -0.556 -- -0.276 1.06 -- -- -- --
296.45 0.806 4.82 -0.317 0.496 -- -- -- -0.273 1.05 -- -- -- --
278.23 0.777 4.81 -0.236 -- 0.772 -- -- -0.249 -- 81.21 13 5.89 14.5
255.36 0.744 4.82 -- 0.648 0.953 -- -- -0.243 0.161 81.47 22 5.85 14
311.76 0.825 4.82 -0.298 -- -- -- -- -0.263 -- -- -- -- --
299.1 0.809 4.82 -- 0.491 -- -- -- -0.238 1.02 -- -- -- --
279.69 0.779 4.81 -- -- 0.783 -- -- -0.229 -- 81.26 13 5.89 14.1
314.1 0.827 4.81 -- -- -- -- -- -0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.05 humidity 70.0 10 > th dose dependent rect. 6 14
5 255.15 temperature 10.0 30 > th dose dependent rect. 9 14
6 255.16 humidity 80.0 10 > th dose independent rect. 6 14
8 255.23 radiation 20.0 4320 < th dose independent rect. 21 9
11 255.54 humidity 70.0 10 > th dose dependent rect. 6 12
13 255.66 temperature 15.0 10 > th dose dependent rect. 9 17
24 256.73 temperature 10.0 10 > th dose dependent rect. 9 21
34 258.13 humidity 80.0 10 > th dose independent rect. 6 12
41 258.56 humidity 90.0 30 < th dose independent rect. 9 14
53 259.49 humidity 70.0 10 > th dose dependent rect. 6 10
59 259.79 temperature 10.0 10 > th dose dependent rect. 7 23
62 260.07 radiation 1.0 270 < th dose independent rect. 5 13
65 260.12 humidity 80.0 30 < th dose independent rect. 9 8
82 261.45 humidity 80.0 10 > th dose independent rect. 6 10
96 262.11 radiation 1.0 270 < th dose dependent rect. 5 13
98 262.20 humidity 80.0 30 < th dose independent rect. 9 5
102 262.49 atmosphere 1005.0 30 > th dose dependent rect. 2 7
134 263.45 temperature 25.0 30 > th dose independent rect. 9 14
137 263.57 humidity 90.0 10 < th dose dependent rect. 9 8
182 264.88 radiation 20.0 4320 < th dose independent rect. 23 7
214 265.75 temperature 20.0 10 > th dose independent rect. 9 21
223 265.92 temperature 10.0 43200 > th dose independent rect. 10 8
225 265.92 humidity 90.0 30 < th dose dependent rect. 9 5
235 266.08 humidity 80.0 30 < th dose independent rect. 9 10
239 266.23 humidity 70.0 30 > th dose dependent sin 0 NA
240 266.24 atmosphere 1005.0 10 > th dose dependent rect. 6 3
244 266.30 temperature 10.0 43200 > th dose independent rect. 10 5
268 266.66 humidity 90.0 10 < th dose dependent rect. 7 10
276 266.81 radiation 40.0 30 < th dose dependent rect. 6 14
282 266.94 humidity 80.0 10 > th dose independent sin 0 NA
293 267.09 humidity 80.0 10 < th dose independent rect. 7 10
295 267.11 humidity 80.0 10 < th dose independent sin 0 NA
301 267.19 radiation 30.0 10 < th dose dependent rect. 6 3
309 267.23 radiation 20.0 30 < th dose independent rect. 6 14
329 267.52 radiation 20.0 10 < th dose independent rect. 6 3
343 267.69 radiation 20.0 4320 < th dose independent rect. 19 11
361 267.83 temperature 10.0 10 > th dose dependent rect. 20 10
370 267.93 humidity 80.0 10 > th dose independent rect. 20 10
373 267.99 wind 7.0 14400 > th dose independent rect. 22 3
384 268.06 humidity 80.0 90 > th dose independent rect. 20 9
390 268.12 temperature 15.0 4320 > th dose independent rect. 7 3
402 268.25 wind 1.0 90 > th dose independent rect. 5 15
420 268.41 humidity 90.0 270 < th dose independent rect. 9 1
440 268.56 wind 7.0 14400 > th dose dependent rect. 22 3
447 268.68 temperature 15.0 1440 > th dose independent rect. 6 15
462 268.83 humidity 90.0 30 < th dose dependent rect. 7 7
478 268.99 radiation 40.0 30 < th dose dependent rect. 23 23
480 269.01 temperature 30.0 90 < th dose dependent rect. 11 22
486 269.05 humidity 90.0 30 < th dose independent rect. 9 12
489 269.06 wind 5.0 43200 < th dose dependent rect. 16 1
490 269.10 wind 3.0 43200 > th dose independent rect. 16 1
512 269.26 humidity 90.0 30 < th dose dependent sin 1 NA
516 269.27 wind 5.0 43200 < th dose dependent rect. 15 5
517 269.29 radiation 40.0 30 < th dose independent rect. 6 14
523 269.33 temperature 25.0 90 < th dose independent rect. 13 10
526 269.34 humidity 60.0 43200 > th dose independent rect. 8 2
528 269.35 wind 3.0 43200 < th dose independent rect. 16 1
539 269.44 radiation 20.0 30 < th dose independent rect. 23 23
541 269.45 wind 7.0 10 < th dose independent rect. 9 21
561 269.56 wind 1.0 43200 < th dose independent rect. 9 19
563 269.56 humidity 50.0 30 > th dose dependent rect. 23 23
564 269.57 temperature 20.0 30 > th dose independent rect. 20 18
567 269.59 wind 7.0 14400 < th dose independent rect. 22 4
572 269.60 humidity 50.0 10 > th dose dependent rect. 6 3
574 269.61 humidity 60.0 43200 < th dose independent rect. 9 1
577 269.61 wind 1.0 43200 > th dose dependent rect. 15 4
578 269.62 humidity 60.0 43200 > th dose independent rect. 6 4
607 269.77 humidity 70.0 10 > th dose dependent rect. 11 9
609 269.78 humidity 80.0 43200 < th dose independent sin 6 NA
624 269.84 wind 1.0 43200 < th dose dependent rect. 9 17
633 269.89 humidity 80.0 10 > th dose independent rect. 11 9
634 269.89 wind 1.0 43200 < th dose independent rect. 11 15
636 269.90 wind 1.0 43200 > th dose independent rect. 8 20
639 269.91 humidity 80.0 43200 < th dose independent rect. 20 19
644 269.94 humidity 80.0 43200 < th dose independent rect. 21 17
655 269.99 wind 1.0 43200 > th dose independent rect. 8 18
657 270.00 radiation 1.0 270 > th dose independent rect. 7 11
677 270.07 radiation 1.0 270 > th dose independent sin 1 NA
685 270.08 temperature 15.0 14400 > th dose independent rect. 20 1
698 270.12 wind 1.0 43200 < th dose dependent sin 19 NA
701 270.14 radiation 20.0 90 < th dose independent rect. 12 21
717 270.20 humidity 70.0 10 > th dose independent rect. 6 3
724 270.23 humidity 80.0 43200 < th dose independent rect. 22 15
748 270.32 humidity 70.0 30 > th dose independent rect. 23 21
752 270.34 temperature 20.0 30 > th dose independent rect. 9 5
754 270.34 wind 1.0 43200 > th dose dependent rect. 15 1
760 270.36 humidity 80.0 43200 < th dose independent rect. 24 13
761 270.36 wind 1.0 270 > th dose independent rect. 3 15
765 270.37 humidity 50.0 43200 > th dose independent rect. 3 12
766 270.37 humidity 50.0 43200 < th dose independent rect. 3 12
769 270.37 wind 1.0 43200 > th dose independent rect. 12 14
782 270.38 humidity 90.0 30 < th dose independent rect. 9 20
786 270.39 precipitation 0.1 1440 < th dose independent rect. 10 3
791 270.39 precipitation 0.1 1440 < th dose dependent rect. 10 3
792 270.40 temperature 25.0 30 > th dose independent rect. 20 3
807 270.42 humidity 80.0 43200 < th dose independent rect. 1 11
812 270.44 radiation 1.0 270 < th dose independent sin 1 NA
822 270.47 wind 1.0 43200 > th dose independent rect. 8 5
834 270.50 humidity 50.0 43200 > th dose independent rect. 9 4
843 270.50 wind 1.0 43200 < th dose dependent rect. 10 3
872 270.57 humidity 70.0 43200 > th dose independent rect. 22 18
875 270.58 humidity 80.0 720 > th dose independent rect. 5 9
890 270.60 wind 9.0 10 < th dose dependent rect. 9 21
891 270.61 wind 5.0 10 < th dose independent rect. 6 3
919 270.64 wind 5.0 43200 < th dose independent rect. 18 1
940 270.67 humidity 50.0 43200 > th dose independent sin 4 NA
948 270.68 humidity 50.0 43200 < th dose independent rect. 9 6
971 270.71 temperature 25.0 90 < th dose independent rect. 13 8
974 270.71 humidity 90.0 43200 < th dose dependent rect. 22 16
977 270.73 humidity 50.0 43200 < th dose independent sin 3 NA