BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0289000 Os02g0289000|AK106817
         (225 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0289000  Conserved hypothetical protein                      265   3e-71
Os02g0288600  BURP domain containing protein                      126   1e-29

>Os02g0289000 Conserved hypothetical protein
          Length = 225

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/225 (64%), Positives = 146/225 (64%)

Query: 1   MPKTQRRPGCCVLPEGTKLTLAHDDHGVAAAAPRFIIYKDKADAVPSNLRAMDAILAMFG 60
           MPKTQRRPGCCVLPEGTKLTLAHDDHGVAAAAPRFIIYKDKADAVPSNLRAMDAILAMFG
Sbjct: 1   MPKTQRRPGCCVLPEGTKLTLAHDDHGVAAAAPRFIIYKDKADAVPSNLRAMDAILAMFG 60

Query: 61  ILPGSDKAAQVADTLRTCGELTAAGGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ILPGSDKAAQVADTLRTCGELTAAGGEE                                
Sbjct: 61  ILPGSDKAAQVADTLRTCGELTAAGGEEPRHLPRGGARLRRLGAGHQRAARGHHARAREG 120

Query: 121 XXQVXXXXXXXXXXXXXXXXXVPPYAISIRGVLLPPASXXXXXXXXXXXXXXXXXXXXXX 180
             QV                 VPPYAISIRGVLLPPAS                      
Sbjct: 121 APQVRGSGRRRRPDRRRRRGGVPPYAISIRGVLLPPASRRGGAEGRPPRRRRRGPGRRHC 180

Query: 181 XXXXXXQHHHLGQCLLRAPQGKPWRRHLPLHAAGLCSVASQLRRY 225
                 QHHHLGQCLLRAPQGKPWRRHLPLHAAGLCSVASQLRRY
Sbjct: 181 RRRVPRQHHHLGQCLLRAPQGKPWRRHLPLHAAGLCSVASQLRRY 225



>Os02g0288600 BURP domain containing protein
          Length = 347

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 67/75 (89%), Gaps = 1/75 (1%)

Query: 12  VLPEGTKLTLAHDDHGVAAAAPRFIIYKDKADAVPSNLRAMDAILAMFGILPGSDKAAQV 71
           VLPEGTKL L H DHGVAAAAPRFI YKDK DAVP +LRAMDAILAMFGILPGSDKAAQV
Sbjct: 133 VLPEGTKLALPHGDHGVAAAAPRFI-YKDKGDAVPFDLRAMDAILAMFGILPGSDKAAQV 191

Query: 72  ADTLRTCGELTAAGG 86
           ADTLR C ELTAAGG
Sbjct: 192 ADTLRACSELTAAGG 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,766,297
Number of extensions: 171668
Number of successful extensions: 357
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)