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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0289000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0286) R2 : 0.00157
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0511 (0.0603) R2dN8 : 0.00203 R2N8 : 0.00157
σ : 0.539
deviance : 133.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.24 0.524 2.55 2.33 0.0285 -18.1 0.537 112 0.0906 7.19 995.8 1283 -- --
130.81 0.537 2.92 0.212 0.0876 -0.0342 0.617 -- 0.0755 6.25 995.8 1283 -- --
124.1 0.519 2.58 2.16 0.106 -18.1 -- 112 0.0892 1.85 996.3 1289 -- --
125.54 0.522 2.93 0.152 0.0361 1.09 -- -- 0.0709 7.45 997.5 1308 -- --
124.73 0.52 2.58 2.18 -- -18.4 -- 114 0.0919 -- 996.3 1289 -- --
130.81 0.536 2.92 0.211 0.0888 -- 0.618 -- 0.0757 6.23 -- -- -- --
131.23 0.536 2.92 0.215 0.13 -- -- -- 0.0722 3.28 -- -- -- --
125.53 0.522 2.91 0.175 -- 1.15 -- -- 0.0945 -- 997.5 1310 -- --
125.58 0.522 2.92 -- 0.117 1.18 -- -- 0.0746 3.01 997.5 1356 -- --
132.19 0.537 2.92 0.221 -- -- -- -- 0.0756 -- -- -- -- --
132.46 0.538 2.92 -- 0.134 -- -- -- 0.0482 3.28 -- -- -- --
126.33 0.523 2.92 -- -- 1.18 -- -- 0.0755 -- 997.5 1310 -- --
133.47 0.539 2.92 -- -- -- -- -- 0.0511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.97 atmosphere 1000.0 90 < th dose dependent rect. 4 3
2 112.98 atmosphere 1000.0 90 < th dose independent rect. 4 3
4 113.61 atmosphere 1000.0 90 < th dose independent rect. 4 1
32 114.65 atmosphere 1000.0 30 < th dose dependent rect. 5 5
44 115.53 atmosphere 1000.0 90 < th dose independent rect. 4 5
53 115.99 atmosphere 1000.0 10 < th dose independent rect. 4 6
77 116.62 atmosphere 1000.0 270 < th dose dependent rect. 2 7
133 117.72 atmosphere 1000.0 10 > th dose independent rect. 21 23
188 118.64 atmosphere 1000.0 720 < th dose dependent rect. 23 7
201 118.85 atmosphere 1000.0 720 > th dose independent rect. 21 8
211 119.05 radiation 1.0 43200 < th dose dependent rect. 21 1
301 120.23 atmosphere 1000.0 270 < th dose dependent sin 7 NA
311 120.37 atmosphere 1000.0 720 < th dose independent rect. 20 10
324 120.48 atmosphere 1000.0 720 > th dose independent rect. 21 12
349 120.81 atmosphere 1000.0 10 > th dose independent sin 6 NA
353 120.82 atmosphere 1000.0 270 > th dose independent sin 8 NA
370 120.92 atmosphere 1000.0 720 > th dose independent rect. 21 4
402 121.14 atmosphere 1000.0 270 < th dose independent sin 7 NA
405 121.17 atmosphere 1000.0 30 < th dose independent sin 6 NA
425 121.26 humidity 90.0 10 < th dose dependent rect. 20 1
556 121.76 atmosphere 1005.0 10 > th dose independent rect. 20 1
562 121.79 humidity 90.0 10 < th dose independent rect. 20 1
565 121.80 atmosphere 1000.0 10 < th dose independent rect. 21 14
582 121.86 wind 5.0 10 < th dose independent rect. 20 1
587 121.87 temperature 20.0 10 > th dose independent rect. 20 1
592 121.89 temperature 30.0 30 < th dose dependent rect. 20 1
597 121.90 wind 7.0 10 < th dose dependent rect. 20 1
614 121.93 wind 1.0 10 > th dose independent rect. 20 1
616 121.93 temperature 10.0 10 > th dose independent rect. 20 1
618 121.93 temperature 30.0 10 < th dose independent rect. 20 1
619 121.93 humidity 50.0 10 > th dose independent rect. 20 1
622 121.93 atmosphere 995.0 10 > th dose independent rect. 20 1
624 121.93 atmosphere 1010.0 10 < th dose independent rect. 20 1
626 121.93 radiation 1.0 10 < th dose independent rect. 20 1
631 121.93 precipitation 0.1 10 < th dose independent rect. 20 1
634 121.93 temperature 10.0 10 > th dose independent rect. 21 23
635 121.93 atmosphere 1010.0 30 < th dose dependent rect. 20 1
636 121.93 radiation 1.0 10 < th dose dependent rect. 20 1
641 121.93 precipitation 0.1 10 < th dose dependent rect. 20 1
661 121.97 atmosphere 995.0 10 > th dose dependent rect. 20 1
709 122.02 temperature 10.0 10 > th dose dependent rect. 20 1
721 122.05 wind 1.0 30 > th dose dependent rect. 20 1
731 122.06 humidity 50.0 30 > th dose dependent rect. 20 1
732 122.06 temperature 25.0 4320 > th dose dependent rect. 2 3
734 122.07 precipitation 0.1 10 < th dose independent rect. 21 23
738 122.07 precipitation 0.1 10 < th dose dependent rect. 21 23
739 122.08 temperature 10.0 1440 > th dose independent rect. 21 1
742 122.08 temperature 30.0 1440 < th dose independent rect. 21 1
746 122.08 humidity 50.0 1440 > th dose independent rect. 21 1
752 122.08 atmosphere 995.0 1440 > th dose independent rect. 21 1
753 122.08 radiation 1.0 1440 < th dose independent rect. 21 1
775 122.08 temperature 10.0 1440 > th dose independent rect. 22 23
919 122.39 wind 9.0 30 < th dose independent rect. 21 23
947 122.46 atmosphere 1000.0 10 < th dose independent rect. 24 11