BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0286600 Os02g0286600|Os02g0286600
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0286600                                                      287   1e-78
Os10g0419600  Chlorophyllase family protein                        74   3e-14

>Os02g0286600 
          Length = 140

 Score =  287 bits (735), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MGLANLVILYFPYQLFPTKMENSIRHGPRHVGGPPCAPAGVNHCEFYDECAPPRYHFVLR 60
           MGLANLVILYFPYQLFPTKMENSIRHGPRHVGGPPCAPAGVNHCEFYDECAPPRYHFVLR
Sbjct: 1   MGLANLVILYFPYQLFPTKMENSIRHGPRHVGGPPCAPAGVNHCEFYDECAPPRYHFVLR 60

Query: 61  DNGHLDMLDDGVPYAINNCMCMRNLGDTKEVARRTIGGLMVAFLRDALEDQHDDLKLVLK 120
           DNGHLDMLDDGVPYAINNCMCMRNLGDTKEVARRTIGGLMVAFLRDALEDQHDDLKLVLK
Sbjct: 61  DNGHLDMLDDGVPYAINNCMCMRNLGDTKEVARRTIGGLMVAFLRDALEDQHDDLKLVLK 120

Query: 121 VGVNPGLAPAVIKPVAYDLA 140
           VGVNPGLAPAVIKPVAYDLA
Sbjct: 121 VGVNPGLAPAVIKPVAYDLA 140



>Os10g0419600 Chlorophyllase family protein
          Length = 367

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 2   GLANLVILYFPYQLFPTKMENSIRHGPRHVGGPPCAPAGVNHCEFYDECAPPRYHFVLRD 61
           G AN + +  P  +  T +    R  P     P CAP GV+H EFY ECA P  H V RD
Sbjct: 227 GGANSLRVPAPVMVIGTGLGGLARAAPLL---PACAPPGVSHGEFYGECAAPACHLVARD 283

Query: 62  NGHLDMLDDGVPYA---INNCMCMRNLGDTKEVARRTIGGLMVAFLRDALEDQHDDLKLV 118
            GH DM+DD  P A       +C    G  +   RR  GG MVAF++  +E + + L  V
Sbjct: 284 YGHTDMMDDVTPGARGLATRAVCRS--GGARAPMRRFFGGAMVAFVKRWVEGEPELLDCV 341

Query: 119 LKVGVNPGLAPAVIKPVAY 137
                 P  AP V+  V +
Sbjct: 342 R---ARPETAPVVLSAVEF 357



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.145    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,586,136
Number of extensions: 242531
Number of successful extensions: 571
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)