BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0279600 Os02g0279600|Os02g0279600
         (130 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0279600  Conserved hypothetical protein                      161   1e-40

>Os02g0279600 Conserved hypothetical protein
          Length = 130

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 85/103 (82%)

Query: 28  STSNLLQLMEESSPAQXXXXXXXXXXXXXXXXXXNTGQVLHQLPSVISSLDAYMDASLQS 87
           STSNLLQLMEESSPAQ                  NTGQVLHQLPSVISSLDAYMDASLQS
Sbjct: 28  STSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPSVISSLDAYMDASLQS 87

Query: 88  ASQIKTVTQLLSNMENNQLRSILPASRLEKAQKKTETGELRIE 130
           ASQIKTVTQLLSNMENNQLRSILPASRLEKAQKKTETGELRIE
Sbjct: 88  ASQIKTVTQLLSNMENNQLRSILPASRLEKAQKKTETGELRIE 130



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.118    0.290 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,107,823
Number of extensions: 49340
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 41
Effective length of database: 12,388,755
Effective search space: 507938955
Effective search space used: 507938955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 150 (62.4 bits)