BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0272800 Os02g0272800|AK111345
         (213 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0272800  Hypothetical protein                                400   e-112

>Os02g0272800 Hypothetical protein
          Length = 213

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/213 (93%), Positives = 199/213 (93%)

Query: 1   MEKQNIDFGKVLGEIQESLVSLHRAQGDTQAAIIKLDQGVSAWRPQVEAAVQDLHEEVGD 60
           MEKQNIDFGKVLGEIQESLVSLHRAQGDTQAAIIKLDQGVSAWRPQVEAAVQDLHEEVGD
Sbjct: 1   MEKQNIDFGKVLGEIQESLVSLHRAQGDTQAAIIKLDQGVSAWRPQVEAAVQDLHEEVGD 60

Query: 61  LRQQVDLLNKVKQAPPAASSPRVPLTGEERKXXXXXXXXXXXXXXVAEGAEKWANGHRLH 120
           LRQQVDLLNKVKQAPPAASSPRVPLTGEERK              VAEGAEKWANGHRLH
Sbjct: 61  LRQQVDLLNKVKQAPPAASSPRVPLTGEERKAPLLPTPTATSPAAVAEGAEKWANGHRLH 120

Query: 121 QNFRGKASGVVTTLIHSLGKDAPVKNVNHLPVQGIVVNISIVVALVPLDCIFQKDIDGDV 180
           QNFRGKASGVVTTLIHSLGKDAPVKNVNHLPVQGIVVNISIVVALVPLDCIFQKDIDGDV
Sbjct: 121 QNFRGKASGVVTTLIHSLGKDAPVKNVNHLPVQGIVVNISIVVALVPLDCIFQKDIDGDV 180

Query: 181 SIKSKKAWDQGLSLQQKRSQDQNPTNPDNRYTR 213
           SIKSKKAWDQGLSLQQKRSQDQNPTNPDNRYTR
Sbjct: 181 SIKSKKAWDQGLSLQQKRSQDQNPTNPDNRYTR 213



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,902,143
Number of extensions: 258332
Number of successful extensions: 609
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)