BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0270900 Os02g0270900|Os02g0270900
(110 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0270900 223 3e-59
Os11g0596500 214 1e-56
Os12g0564000 194 1e-50
Os02g0731801 127 2e-30
Os01g0581500 123 3e-29
Os04g0327100 115 8e-27
Os04g0318100 115 8e-27
Os03g0561166 113 3e-26
Os07g0243600 85 9e-18
>Os02g0270900
Length = 110
Score = 223 bits (567), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE
Sbjct: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATGRCVTGDRRL 110
DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATGRCVTGDRRL
Sbjct: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATGRCVTGDRRL 110
>Os11g0596500
Length = 110
Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/110 (95%), Positives = 107/110 (97%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
MASIAWQRCVVYGLRRLDD+P NSD+MACDV GAGDALRAPSSDAPA ILLEQPADEFEE
Sbjct: 1 MASIAWQRCVVYGLRRLDDVPGNSDKMACDVTGAGDALRAPSSDAPASILLEQPADEFEE 60
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATGRCVTGDRRL 110
DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATGRCVTGDRRL
Sbjct: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATGRCVTGDRRL 110
>Os12g0564000
Length = 149
Score = 194 bits (492), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/99 (95%), Positives = 96/99 (96%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
MASIAWQRCVVYGLRRLDD+PDNSDEMACDVAGAGDALRAPSSDAPAGILLEQ ADEFEE
Sbjct: 1 MASIAWQRCVVYGLRRLDDVPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQLADEFEE 60
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAA 99
DGEAATGKATTSNVS TSHRQVKTSWDRGCGRRGKD AA
Sbjct: 61 DGEAATGKATTSNVSVTSHRQVKTSWDRGCGRRGKDFAA 99
>Os02g0731801
Length = 160
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/66 (87%), Positives = 63/66 (95%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
MASIAWQRC+VYGLRRL+D+P NSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE
Sbjct: 12 MASIAWQRCIVYGLRRLNDVPGNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 71
Query: 61 DGEAAT 66
D + +T
Sbjct: 72 DDDIST 77
>Os01g0581500
Length = 112
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/101 (65%), Positives = 71/101 (70%), Gaps = 11/101 (10%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
M SIAWQRCVVYGLRRLDD+P NSDEMACDVAGAGDALRAPSS AP G+LLEQPADEFEE
Sbjct: 12 MTSIAWQRCVVYGLRRLDDVPGNSDEMACDVAGAGDALRAPSSGAPVGVLLEQPADEFEE 71
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATG 101
DG + T S S R GC R+G +V G
Sbjct: 72 DGNVDESERT----SVMSRRG-------GCDRQGDNVQRLG 101
>Os04g0327100
Length = 125
Score = 115 bits (288), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 68/101 (67%), Gaps = 11/101 (10%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
M SIAWQRCV+YGLRRL D+P NSDEMA DVAGAGDALRAPSS PAG+LLEQPADEFEE
Sbjct: 1 MTSIAWQRCVIYGLRRLGDVPGNSDEMAYDVAGAGDALRAPSSGTPAGVLLEQPADEFEE 60
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATG 101
DG + T S S R GC R G +V G
Sbjct: 61 DGNVDESERT----SVMSRRG-------GCDREGDNVQRLG 90
>Os04g0318100
Length = 125
Score = 115 bits (288), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 68/101 (67%), Gaps = 11/101 (10%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
M SIAWQRCV+YGLRRL D+P NSDEMA DVAGAGDALRAPSS PAG+LLEQPADEFEE
Sbjct: 1 MTSIAWQRCVIYGLRRLGDVPGNSDEMAYDVAGAGDALRAPSSGTPAGVLLEQPADEFEE 60
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATG 101
DG + T S S R GC R G +V G
Sbjct: 61 DGNVDESERT----SVMSRRG-------GCDREGDNVQRLG 90
>Os03g0561166
Length = 169
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 67/101 (66%), Gaps = 11/101 (10%)
Query: 1 MASIAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEE 60
M SIAWQRCVVYGLRRL D+P NSDEMA DVAGA DALRAPSS PAG++LEQPADEFEE
Sbjct: 1 MTSIAWQRCVVYGLRRLGDVPGNSDEMAYDVAGASDALRAPSSGTPAGVVLEQPADEFEE 60
Query: 61 DGEAATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATG 101
DG + T S S R GC R G +V G
Sbjct: 61 DGNVDESERT----SVMSRRG-------GCDREGDNVQRLG 90
>Os07g0243600
Length = 139
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 57/98 (58%), Gaps = 11/98 (11%)
Query: 4 IAWQRCVVYGLRRLDDIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEEDGE 63
+A +R RR D+P NSDEMA DVAGA DALRAPSS PAG+LLEQPADEFEEDG
Sbjct: 18 VALRRLRTQAARRRRDVPGNSDEMAYDVAGASDALRAPSSGTPAGVLLEQPADEFEEDGN 77
Query: 64 AATGKATTSNVSATSHRQVKTSWDRGCGRRGKDVAATG 101
+ T S S R GC R G +V G
Sbjct: 78 VDESERT----SVMSRRG-------GCDREGDNVQRLG 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,502,567
Number of extensions: 190352
Number of successful extensions: 658
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 9
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)