Os02g0270900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0270900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 280.25 | 0.787 | 7.64 | -1.42 | 0.399 | 1.97 | 0.253 | -0.566 | 0.843 | 14.7 | 29.3 | 4887 | -- | -- |
| 280.34 | 0.78 | 7.66 | -1.53 | 0.387 | 1.91 | 0.216 | -- | 0.814 | 14.7 | 29.35 | 4884 | -- | -- |
| 280.45 | 0.78 | 7.64 | -1.4 | 0.403 | 1.98 | -- | -0.597 | 0.846 | 14.9 | 29.3 | 4884 | -- | -- |
| 280.51 | 0.78 | 7.66 | -1.54 | 0.4 | 1.91 | -- | -- | 0.825 | 14.9 | 29.33 | 4884 | -- | -- |
| 288.85 | 0.792 | 7.65 | -1.44 | -- | 1.96 | -- | -0.394 | 0.828 | -- | 29.4 | 5014 | -- | -- |
| 414.43 | 0.954 | 7.64 | -2.1 | 0.459 | -- | 0.578 | -- | 0.873 | 13.1 | -- | -- | -- | -- |
| 415.76 | 0.955 | 7.64 | -2.08 | 0.462 | -- | -- | -- | 0.877 | 13.4 | -- | -- | -- | -- |
| 288.8 | 0.792 | 7.66 | -1.55 | -- | 1.91 | -- | -- | 0.805 | -- | 29.4 | 5014 | -- | -- |
| 337.86 | 0.856 | 7.65 | -- | 0.545 | 2.33 | -- | -- | 1.16 | 14.9 | 27.8 | 4848 | -- | -- |
| 428.89 | 0.968 | 7.65 | -2.1 | -- | -- | -- | -- | 0.867 | -- | -- | -- | -- | -- |
| 530.17 | 1.08 | 7.59 | -- | 0.498 | -- | -- | -- | 1.11 | 13.5 | -- | -- | -- | -- |
| 335.68 | 0.853 | 7.47 | -- | -- | 2.23 | -- | -- | 1.65 | -- | 24.86 | 6832 | -- | -- |
| 545.39 | 1.09 | 7.59 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 280.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 17 |
| 2 | 280.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 13 | 281.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 14 | 281.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 16 | 281.78 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 31 | 282.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 49 | 283.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 56 | 283.59 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 65 | 283.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 129 | 285.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 134 | 285.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 135 | 285.79 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 138 | 285.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 144 | 285.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 146 | 285.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 14 |
| 162 | 286.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 197 | 286.20 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 198 | 286.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 244 | 286.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 369 | 287.42 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 384 | 287.61 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 469 | 288.35 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 493 | 288.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 498 | 288.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 509 | 288.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 642 | 290.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 670 | 290.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 700 | 291.05 | temperature | 30 | 4320 | < th | dose independent | sin | 0 | NA |
| 758 | 291.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 19 |
| 761 | 291.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 16 |
| 775 | 291.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 815 | 291.64 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 820 | 291.66 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 821 | 291.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 831 | 291.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 869 | 291.91 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 919 | 292.07 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 927 | 292.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 931 | 292.08 | temperature | 30 | 4320 | > th | dose independent | sin | 0 | NA |