BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0265700 Os02g0265700|AK100882
         (398 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0265700  Hypothetical protein                                818   0.0  

>Os02g0265700 Hypothetical protein
          Length = 398

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/398 (100%), Positives = 398/398 (100%)

Query: 1   MLSGRDSYSKDPNFLLSPKLPTASTSSCDGKDQCTDKPMKGPSQMEVCDSTIHCPKDILN 60
           MLSGRDSYSKDPNFLLSPKLPTASTSSCDGKDQCTDKPMKGPSQMEVCDSTIHCPKDILN
Sbjct: 1   MLSGRDSYSKDPNFLLSPKLPTASTSSCDGKDQCTDKPMKGPSQMEVCDSTIHCPKDILN 60

Query: 61  RLTLPQGQDLDSLLSPGCESSAAVKPSLPSVTTHGASLPPFPWSHSQAGGYRPGADCGKH 120
           RLTLPQGQDLDSLLSPGCESSAAVKPSLPSVTTHGASLPPFPWSHSQAGGYRPGADCGKH
Sbjct: 61  RLTLPQGQDLDSLLSPGCESSAAVKPSLPSVTTHGASLPPFPWSHSQAGGYRPGADCGKH 120

Query: 121 GSSRSNTQWQWVRVGSNLTALDSEDPSVHKIDDLLQEMDTAKTSIMDSYGKQSSLCCTES 180
           GSSRSNTQWQWVRVGSNLTALDSEDPSVHKIDDLLQEMDTAKTSIMDSYGKQSSLCCTES
Sbjct: 121 GSSRSNTQWQWVRVGSNLTALDSEDPSVHKIDDLLQEMDTAKTSIMDSYGKQSSLCCTES 180

Query: 181 TSGSLGQIIQSRKKLNGHNPQQLFSMDNVDSSDSFQKNDNESFLLRTPQASPKVLQAAEI 240
           TSGSLGQIIQSRKKLNGHNPQQLFSMDNVDSSDSFQKNDNESFLLRTPQASPKVLQAAEI
Sbjct: 181 TSGSLGQIIQSRKKLNGHNPQQLFSMDNVDSSDSFQKNDNESFLLRTPQASPKVLQAAEI 240

Query: 241 LCDMRSSMDVWSPQVFSNGTIKWPKSPSEKVMKARKPSSPFGTAESSSGSRNSDAARAGN 300
           LCDMRSSMDVWSPQVFSNGTIKWPKSPSEKVMKARKPSSPFGTAESSSGSRNSDAARAGN
Sbjct: 241 LCDMRSSMDVWSPQVFSNGTIKWPKSPSEKVMKARKPSSPFGTAESSSGSRNSDAARAGN 300

Query: 301 NHSTKKIVDRKNDSVRMNNPGKGSIRWPVPIEDGASPVKSERGLVLDMRQNHVNAARHPN 360
           NHSTKKIVDRKNDSVRMNNPGKGSIRWPVPIEDGASPVKSERGLVLDMRQNHVNAARHPN
Sbjct: 301 NHSTKKIVDRKNDSVRMNNPGKGSIRWPVPIEDGASPVKSERGLVLDMRQNHVNAARHPN 360

Query: 361 QVSSQAKEYENQQKLRKATLTSSLGSAGDWNRDRNKRM 398
           QVSSQAKEYENQQKLRKATLTSSLGSAGDWNRDRNKRM
Sbjct: 361 QVSSQAKEYENQQKLRKATLTSSLGSAGDWNRDRNKRM 398



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,623,486
Number of extensions: 648183
Number of successful extensions: 1670
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)