BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0261000 Os02g0261000|Os02g0261000
         (290 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0261000  Harpin-induced 1 domain containing protein          266   1e-71

>Os02g0261000 Harpin-induced 1 domain containing protein
          Length = 290

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/241 (60%), Positives = 146/241 (60%)

Query: 50  LKPPPAHQYRXXXXXXPANXXXXXXXXXXXXXXXXXXXVCCLATGFVXXXXXXXXXXXXX 109
           LKPPPAHQYR      PAN                   VCCLATGFV             
Sbjct: 50  LKPPPAHQYRQQQQQQPANRKRQYGRHRGGGGGCSGRRVCCLATGFVLLALCLALAAACL 109

Query: 110 XXXXXHPRPPSFHLQPLAATRFRVGNSSAVSAMDVTAAVRVVSWNPNDRVSFEYGDGEGR 169
                HPRPPSFHLQPLAATRFRVGNSSAVSAMDVTAAVRVVSWNPNDRVSFEYGDGEGR
Sbjct: 110 AYLYYHPRPPSFHLQPLAATRFRVGNSSAVSAMDVTAAVRVVSWNPNDRVSFEYGDGEGR 169

Query: 170 XXXXXXXXXXXXXWAPVAGFRHAPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAF 229
                        WAPVAGFRHAPRS                              QLAF
Sbjct: 170 VALADADGDVALGWAPVAGFRHAPRSVATVAFVAAAKGVVVDEAVAARVRDRYRRRQLAF 229

Query: 230 KVVVDTHVGARAGAVRTGMVPVRLLCDGGAMAPRXXXXXXXXXPMSKCQVYLFRVRWFSL 289
           KVVVDTHVGARAGAVRTGMVPVRLLCDGGAMAPR         PMSKCQVYLFRVRWFSL
Sbjct: 230 KVVVDTHVGARAGAVRTGMVPVRLLCDGGAMAPRGGVSGSVVGPMSKCQVYLFRVRWFSL 289

Query: 290 N 290
           N
Sbjct: 290 N 290



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,713,320
Number of extensions: 148296
Number of successful extensions: 291
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)