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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0261000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0318) R2 : 0.00268
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0742 (0.067) R2dN8 : 0.00346 R2N8 : 0.00268
σ : 0.6
deviance : 165.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.77 0.598 2.96 -0.0619 0.0276 -0.241 -0.722 1.48 0.0639 17.7 1.04 14 -- --
162.95 0.599 2.95 -0.0119 0.0294 -0.191 -0.565 -- 0.0804 18.4 1.04 14 -- --
162.24 0.598 2.96 -0.0639 0.0405 -0.287 -- 1.16 0.0661 19.4 1.1 13 -- --
163.72 0.6 2.95 -0.00547 0.0316 -0.194 -- -- 0.0783 20.4 1.04 14 -- --
162.32 0.597 2.96 -0.0625 -- -0.275 -- 1.14 0.0655 -- 1.1 13 -- --
164.14 0.601 2.95 0.0116 0.0229 -- 0.604 -- 0.0779 6.02 -- -- -- --
164.9 0.601 2.95 0.0157 0.0526 -- -- -- 0.075 2.02 -- -- -- --
163.78 0.599 2.95 -0.005 -- -0.189 -- -- 0.0779 -- 1.1 13 -- --
163.72 0.599 2.95 -- 0.0315 -0.193 -- -- 0.0789 20.4 1.04 14 -- --
165.07 0.6 2.95 0.0179 -- -- -- -- 0.0762 -- -- -- -- --
164.91 0.601 2.95 -- 0.0528 -- -- -- 0.0732 2.02 -- -- -- --
163.78 0.598 2.95 -- -- -0.188 -- -- 0.0785 -- 1.1 13 -- --
165.08 0.6 2.95 -- -- -- -- -- 0.0742 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.35 humidity 80.0 10 < th dose independent rect. 5 1
6 144.35 humidity 80.0 10 < th dose dependent rect. 5 1
28 147.28 wind 3.0 10 > th dose dependent rect. 6 1
33 149.16 wind 3.0 10 > th dose independent rect. 5 2
34 149.36 wind 3.0 10 > th dose independent rect. 2 5
35 149.45 wind 3.0 10 > th dose dependent rect. 2 5
49 150.20 temperature 30.0 10 < th dose dependent rect. 16 1
54 150.62 humidity 60.0 10 > th dose dependent rect. 16 1
57 150.87 humidity 70.0 10 > th dose independent rect. 16 1
62 151.23 radiation 10.0 10 < th dose dependent rect. 16 1
72 151.88 wind 5.0 30 < th dose independent rect. 16 1
75 151.98 atmosphere 1005.0 10 > th dose independent rect. 16 1
77 151.99 radiation 10.0 10 < th dose independent rect. 16 1
80 152.01 wind 3.0 10 > th dose independent rect. 16 1
81 152.02 atmosphere 1005.0 10 > th dose dependent rect. 16 1
85 152.15 temperature 30.0 10 < th dose independent rect. 16 1
90 152.26 humidity 90.0 10 < th dose independent rect. 16 1
94 152.30 temperature 10.0 10 > th dose independent rect. 16 1
96 152.30 atmosphere 1010.0 10 < th dose independent rect. 16 1
99 152.30 precipitation 0.1 10 < th dose independent rect. 16 1
100 152.30 temperature 10.0 10 > th dose independent rect. 17 23
101 152.30 precipitation 0.1 10 < th dose dependent rect. 16 1
102 152.31 atmosphere 995.0 10 > th dose independent rect. 16 1
103 152.31 wind 3.0 30 < th dose dependent rect. 2 1
105 152.33 atmosphere 1005.0 30 > th dose dependent rect. 2 1
107 152.39 atmosphere 1005.0 90 > th dose dependent rect. 15 2
108 152.42 atmosphere 1005.0 30 > th dose independent rect. 2 1
110 152.46 wind 3.0 30 < th dose independent rect. 2 1
115 152.60 temperature 20.0 30 > th dose dependent rect. 2 1
116 152.62 wind 9.0 10 < th dose dependent rect. 16 1
118 152.67 wind 1.0 10 > th dose dependent rect. 16 1
120 152.69 atmosphere 995.0 10 > th dose independent rect. 17 23
122 152.71 atmosphere 1015.0 10 < th dose dependent rect. 16 1
137 152.87 temperature 25.0 30 < th dose independent rect. 2 1
161 152.99 temperature 10.0 30 > th dose independent rect. 2 1
164 152.99 humidity 50.0 30 > th dose independent rect. 2 1
169 152.99 atmosphere 1010.0 30 < th dose independent rect. 2 1
171 152.99 radiation 1.0 30 < th dose independent rect. 2 1
176 152.99 precipitation 0.1 30 < th dose independent rect. 2 1
177 152.99 temperature 10.0 30 > th dose independent rect. 3 23
178 152.99 humidity 50.0 30 > th dose dependent rect. 2 1
179 152.99 radiation 1.0 30 < th dose dependent rect. 2 1
184 152.99 precipitation 0.1 30 < th dose dependent rect. 2 1
190 153.06 temperature 10.0 10 > th dose dependent rect. 16 1
192 153.07 humidity 80.0 270 < th dose dependent rect. 2 4
208 153.50 temperature 25.0 30 > th dose independent rect. 16 1
210 153.51 temperature 10.0 1440 > th dose independent rect. 17 1
214 153.51 radiation 30.0 1440 < th dose independent rect. 17 1
220 153.51 temperature 10.0 1440 > th dose independent rect. 18 23
223 153.53 radiation 1.0 30 > th dose independent rect. 16 1
224 153.53 precipitation 0.1 10 < th dose independent rect. 17 23
226 153.53 precipitation 0.1 10 < th dose dependent rect. 17 23
245 153.57 radiation 1.0 43200 < th dose dependent rect. 3 1
249 153.63 temperature 30.0 30 < th dose dependent rect. 2 1
263 153.64 radiation 10.0 90 > th dose dependent rect. 16 1
277 153.67 humidity 90.0 30 < th dose dependent rect. 16 1
280 153.69 atmosphere 1015.0 30 < th dose dependent rect. 2 1
357 154.24 wind 9.0 1440 < th dose independent rect. 3 1
358 154.24 temperature 10.0 1440 > th dose independent rect. 3 1
361 154.24 temperature 30.0 1440 < th dose independent rect. 3 1
365 154.24 humidity 50.0 1440 > th dose independent rect. 3 1
374 154.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
375 154.24 radiation 1.0 1440 < th dose independent rect. 3 1
395 154.24 temperature 10.0 1440 > th dose independent rect. 4 23
408 154.42 wind 1.0 30 > th dose independent rect. 2 1
476 155.20 wind 1.0 10 > th dose independent rect. 17 23
477 155.20 wind 9.0 30 < th dose independent rect. 17 23
492 155.36 atmosphere 995.0 30 > th dose independent rect. 3 23
526 155.88 precipitation 0.1 30 < th dose independent rect. 3 23
527 155.88 precipitation 0.1 30 < th dose dependent rect. 3 23
532 155.95 radiation 30.0 30 < th dose independent rect. 14 3
549 156.12 radiation 30.0 10 < th dose dependent rect. 14 3
554 156.19 atmosphere 1005.0 30 > th dose dependent rect. 5 1
598 156.72 humidity 50.0 10 > th dose independent rect. 17 23
612 156.80 wind 9.0 30 < th dose independent rect. 3 23
634 157.06 temperature 20.0 10 < th dose dependent rect. 6 1
637 157.09 temperature 20.0 10 < th dose dependent rect. 5 12
638 157.10 temperature 20.0 270 < th dose independent rect. 2 4
656 157.16 temperature 25.0 90 < th dose dependent rect. 4 3
682 157.31 temperature 25.0 270 > th dose independent rect. 23 3
721 157.43 temperature 20.0 10 < th dose independent rect. 5 1
751 157.47 temperature 15.0 30 > th dose independent rect. 17 9
804 157.64 wind 1.0 10 > th dose independent rect. 17 12
853 157.78 temperature 25.0 270 > th dose dependent rect. 23 4
862 157.83 temperature 15.0 30 > th dose independent rect. 17 7
880 157.91 temperature 30.0 90 < th dose independent rect. 23 18
921 158.03 temperature 25.0 90 < th dose dependent rect. 4 5
922 158.04 radiation 40.0 90 < th dose independent rect. 13 14
961 158.15 temperature 20.0 10 < th dose independent rect. 5 12
988 158.24 wind 5.0 720 < th dose independent rect. 3 2