BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0257200 Os02g0257200|AK103494
         (304 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0257200  Conserved hypothetical protein                      457   e-129
Os05g0586700  Conserved hypothetical protein                      149   2e-36

>Os02g0257200 Conserved hypothetical protein
          Length = 304

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 238/304 (78%), Positives = 238/304 (78%)

Query: 1   MVKLATARECXXXXXXXXXXXXXXXWEYINAGAYVFAAVLLAGGFGWHLSAWSATTRSGX 60
           MVKLATAREC               WEYINAGAYVFAAVLLAGGFGWHLSAWSATTRSG 
Sbjct: 1   MVKLATARECRAYGLGGGGRAARGRWEYINAGAYVFAAVLLAGGFGWHLSAWSATTRSGL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXGVDYSLALAAGLDSQFALVEVAVPAVHFAGTVLTLIA 120
                                  GVDYSLALAAGLDSQFALVEVAVPAVHFAGTVLTLIA
Sbjct: 61  AAAALGLLLLLAVNAHDLLAHAAGVDYSLALAAGLDSQFALVEVAVPAVHFAGTVLTLIA 120

Query: 121 LIFFEIQMARGYRHSLEKHGLNMLIAGPALWLLGSIQNICQVYERANGHVQILQKCVQTP 180
           LIFFEIQMARGYRHSLEKHGLNMLIAGPALWLLGSIQNICQVYERANGHVQILQKCVQTP
Sbjct: 121 LIFFEIQMARGYRHSLEKHGLNMLIAGPALWLLGSIQNICQVYERANGHVQILQKCVQTP 180

Query: 181 LLLGSTLFLIGGIINRHDIHSQSTSRSELLGRSWGWFCVSGSXXXXXXXXXXXXKVFKMQ 240
           LLLGSTLFLIGGIINRHDIHSQSTSRSELLGRSWGWFCVSGS            KVFKMQ
Sbjct: 181 LLLGSTLFLIGGIINRHDIHSQSTSRSELLGRSWGWFCVSGSLLFVAAGLLNLLKVFKMQ 240

Query: 241 QMDGRGLEKLRGGAQERLNREREGKVPLILEEGQRRTXXXXXXXXXXXXXXXYKEAVVSG 300
           QMDGRGLEKLRGGAQERLNREREGKVPLILEEGQRRT               YKEAVVSG
Sbjct: 241 QMDGRGLEKLRGGAQERLNREREGKVPLILEEGQRRTPAPVSGQVPPPPAGSYKEAVVSG 300

Query: 301 APAG 304
           APAG
Sbjct: 301 APAG 304



>Os05g0586700 Conserved hypothetical protein
          Length = 306

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 148/306 (48%), Gaps = 42/306 (13%)

Query: 1   MVKLATARECXXXXXXXXXXXXXXXWEYINAGAYVFAAVLLAGGFGWHLSAWSATTRSGX 60
           MVKLATARE                WEYINAGAYVFAA+LLA       +       +  
Sbjct: 1   MVKLATAREARMYGPALAVRR----WEYINAGAYVFAALLLAVALAALSAGGGGGGGASR 56

Query: 61  XXXXXXXXXXXXXXXXXX---XXXXXGVDYSLALAAGLDSQFALVEVAVPAVHFAGTVLT 117
                                     GVD  + L    D+Q  LVE+ VPA+H AG VL 
Sbjct: 57  AALAVAAVALALVAAVNAHDLAAHLAGVDCRVGLVR-YDAQLGLVELLVPALHVAGCVLA 115

Query: 118 LIALIFFEIQMARGYRHSLEKHGLNMLIAGPALWLLGSIQNICQVYERANGHVQILQKCV 177
           ++A+ F    +++G R   E H  N L+A   +WLLGSI N CQVYERA+G  Q+LQ  V
Sbjct: 116 VVAMAFL---LSQGER---ETHAANTLLAAALVWLLGSILNSCQVYERADGRAQLLQSSV 169

Query: 178 QTPLLLGSTLFLIGGIINR---------------------------HDIHSQSTSRSELL 210
           Q P+LLGS LFL+G ++NR                           HD  ++    +   
Sbjct: 170 QVPMLLGSLLFLVGAVVNRRRRPEPPVLVVSARSIRSSNLAAGVGMHDAMTKPCGLTVTQ 229

Query: 211 GRSWGW-FCVSGSXXXXXXXXXXXXKVFKMQQMDGRGLEKLRGGAQERLNREREGKVPLI 269
           GRSW W  CV GS            KVF M Q D   LEKLRGGAQERL+R+REG++PL 
Sbjct: 230 GRSWAWTMCVLGSVLWLVAAVFNMGKVFVMHQSDAPRLEKLRGGAQERLSRDREGRLPLN 289

Query: 270 LEEGQR 275
            EE  R
Sbjct: 290 WEEAAR 295



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,795,143
Number of extensions: 253687
Number of successful extensions: 451
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 204
Effective length of database: 11,814,401
Effective search space: 2410137804
Effective search space used: 2410137804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)